rs8025476

Homo sapiens
T>A / T>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0296 (8860/29906,GnomAD)
G=0320 (9338/29118,TOPMED)
G=0323 (1617/5008,1000G)
G=0192 (740/3854,ALSPAC)
G=0200 (742/3708,TWINSUK)
chr15:98271069 (GRCh38.p7) (15q26.3)
AD
GWASdb2
1   publication(s)
See rs on genome
20 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 15NC_000015.10:g.98271069T>A
GRCh38.p7 chr 15NC_000015.10:g.98271069T>G
GRCh37.p13 chr 15NC_000015.9:g.98814298T>A
GRCh37.p13 chr 15NC_000015.9:g.98814298T>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.479G=0.521
1000GenomesAmericanSub694T=0.830G=0.170
1000GenomesEast AsianSub1008T=0.648G=0.352
1000GenomesEuropeSub1006T=0.800G=0.200
1000GenomesGlobalStudy-wide5008T=0.677G=0.323
1000GenomesSouth AsianSub978T=0.740G=0.260
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.808G=0.192
The Genome Aggregation DatabaseAfricanSub8682T=0.530G=0.469
The Genome Aggregation DatabaseAmericanSub838T=0.830G=0.17,
The Genome Aggregation DatabaseEast AsianSub1616T=0.660G=0.340
The Genome Aggregation DatabaseEuropeSub18470T=0.781G=0.218
The Genome Aggregation DatabaseGlobalStudy-wide29906T=0.703G=0.296
The Genome Aggregation DatabaseOtherSub300T=0.800G=0.20,
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.679G=0.320
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.800G=0.200
PMID Title Author Journal
23953852Genome-wide association studies of maximum number of drinks.Pan YJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs80254769.49E-05alcohol consumption23953852

eQTL of rs8025476 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs8025476 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr158766146687661632E067-39641
chr158766164287662567E067-38706
chr158766560687665660E070-35613
chr158766577087665834E070-35439
chr158766606387666123E070-35150
chr158766658387666839E070-34434
chr158766771987667889E070-33384
chr158766164287662567E071-38706
chr158766146687661632E072-39641
chr158766164287662567E072-38706
chr158766323087663289E072-37984
chr158766146687661632E073-39641
chr158766146687661632E074-39641
chr158766164287662567E074-38706
chr158766323087663289E074-37984
chr158766146687661632E081-39641
chr158766164287662567E081-38706
chr158774288687742936E08141613
chr158774297587743041E08141702
chr158774337087743420E08142097