rs8028654

Homo sapiens
T>G
ANKRD34C-AS1 : Non Coding Transcript Variant
Check p-value
SNV (Single Nucleotide Variation)
T==0348 (10435/29910,GnomAD)
T==0345 (10048/29118,TOPMED)
T==0416 (2083/5008,1000G)
T==0341 (1316/3854,ALSPAC)
T==0335 (1242/3708,TWINSUK)
chr15:79191741 (GRCh38.p7) (15q25.1)
AD
GWASdb2
1   publication(s)
See rs on genome
57 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 15NC_000015.10:g.79191741T>G
GRCh37.p13 chr 15NC_000015.9:g.79484083T>G

Gene: ANKRD34C-AS1, ANKRD34C antisense RNA 1(minus strand)

Molecule type Change Amino acid[Codon] SO Term
ANKRD34C-AS1 transcriptNR_038997.1:n.659A>CA>CNon Coding Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.302G=0.698
1000GenomesAmericanSub694T=0.480G=0.520
1000GenomesEast AsianSub1008T=0.586G=0.414
1000GenomesEuropeSub1006T=0.343G=0.657
1000GenomesGlobalStudy-wide5008T=0.416G=0.584
1000GenomesSouth AsianSub978T=0.430G=0.570
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.341G=0.659
The Genome Aggregation DatabaseAfricanSub8700T=0.300G=0.700
The Genome Aggregation DatabaseAmericanSub836T=0.480G=0.520
The Genome Aggregation DatabaseEast AsianSub1616T=0.579G=0.421
The Genome Aggregation DatabaseEuropeSub18456T=0.345G=0.654
The Genome Aggregation DatabaseGlobalStudy-wide29910T=0.348G=0.651
The Genome Aggregation DatabaseOtherSub302T=0.370G=0.630
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.345G=0.654
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.335G=0.665
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs80286540.00036alcohol dependence20201924

eQTL of rs8028654 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs8028654 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr157946074479460921E067-23162
chr157946112979461179E067-22904
chr157946131279461857E067-22226
chr157946185879461931E067-22152
chr157946198379462101E067-21982
chr157946213579463007E067-21076
chr157944692779447151E068-36932
chr157944720679447411E068-36672
chr157946131279461857E068-22226
chr157946185879461931E068-22152
chr157946198379462101E068-21982
chr157946213579463007E068-21076
chr157952106779521117E06836984
chr157952122179521278E06837138
chr157946042979460597E069-23486
chr157946074479460921E069-23162
chr157946112979461179E069-22904
chr157946131279461857E069-22226
chr157946185879461931E069-22152
chr157946198379462101E069-21982
chr157946213579463007E069-21076
chr157946131279461857E070-22226
chr157946185879461931E070-22152
chr157946198379462101E070-21982
chr157946213579463007E070-21076
chr157948221579482315E070-1768
chr157948235179482881E070-1202
chr157951528679515385E07031203
chr157946074479460921E071-23162
chr157946112979461179E071-22904
chr157946131279461857E071-22226
chr157946185879461931E071-22152
chr157946198379462101E071-21982
chr157946112979461179E072-22904
chr157946131279461857E072-22226
chr157946185879461931E072-22152
chr157946198379462101E072-21982
chr157946213579463007E072-21076
chr157946213579463007E073-21076
chr157946112979461179E074-22904
chr157946131279461857E074-22226
chr157944692779447151E081-36932
chr157944720679447411E081-36672
chr157944779279447842E081-36241
chr157946131279461857E081-22226
chr157946185879461931E081-22152
chr157946198379462101E081-21982
chr157944692779447151E082-36932
chr157944720679447411E082-36672
chr157944779279447842E082-36241
chr157944786479447914E082-36169
chr157944796579448052E082-36031
chr157946112979461179E082-22904
chr157946131279461857E082-22226
chr157946185879461931E082-22152
chr157946198379462101E082-21982
chr157948235179482881E082-1202