| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 15 | NC_000015.10:g.93209226G>A |
| GRCh37.p13 chr 15 | NC_000015.9:g.93752455G>A |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | G=0.618 | A=0.382 |
| 1000Genomes | American | Sub | 694 | G=0.670 | A=0.330 |
| 1000Genomes | East Asian | Sub | 1008 | G=0.461 | A=0.539 |
| 1000Genomes | Europe | Sub | 1006 | G=0.485 | A=0.515 |
| 1000Genomes | Global | Study-wide | 5008 | G=0.533 | A=0.467 |
| 1000Genomes | South Asian | Sub | 978 | G=0.440 | A=0.560 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.481 | A=0.519 |
| The Genome Aggregation Database | African | Sub | 8704 | G=0.608 | A=0.392 |
| The Genome Aggregation Database | American | Sub | 836 | G=0.720 | A=0.280 |
| The Genome Aggregation Database | East Asian | Sub | 1616 | G=0.441 | A=0.559 |
| The Genome Aggregation Database | Europe | Sub | 18472 | G=0.471 | A=0.528 |
| The Genome Aggregation Database | Global | Study-wide | 29930 | G=0.517 | A=0.482 |
| The Genome Aggregation Database | Other | Sub | 302 | G=0.540 | A=0.460 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.530 | A=0.469 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.471 | A=0.529 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 29478698 | Genome-wide Association Study Identifies a Regulatory Variant of RGMA Associated With Opioid Dependence in European Americans. | Cheng Z | Biol Psychiatry |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs8036747 | 8E-08 | Opioid dependence | 29478698 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr15 | 93725982 | 93726796 | E070 | -25659 |
| chr15 | 93732810 | 93733181 | E070 | -19274 |
| chr15 | 93784954 | 93785731 | E070 | 32499 |
| chr15 | 93785772 | 93785865 | E070 | 33317 |
| chr15 | 93756672 | 93756916 | E082 | 4217 |
| chr15 | 93756999 | 93757039 | E082 | 4544 |
| chr15 | 93757062 | 93757253 | E082 | 4607 |
| chr15 | 93757300 | 93757613 | E082 | 4845 |