rs8040467

Homo sapiens
A>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0301 (9010/29904,GnomAD)
C=0319 (9298/29118,TOPMED)
C=0400 (2001/5008,1000G)
C=0238 (918/3854,ALSPAC)
C=0251 (929/3708,TWINSUK)
chr15:70160606 (GRCh38.p7) (15q23)
AD
GWASdb2
1   publication(s)
See rs on genome
188 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 15NC_000015.10:g.70160606A>C
GRCh37.p13 chr 15NC_000015.9:g.70452945A>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.654C=0.346
1000GenomesAmericanSub694A=0.610C=0.390
1000GenomesEast AsianSub1008A=0.540C=0.460
1000GenomesEuropeSub1006A=0.750C=0.250
1000GenomesGlobalStudy-wide5008A=0.600C=0.400
1000GenomesSouth AsianSub978A=0.430C=0.570
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.762C=0.238
The Genome Aggregation DatabaseAfricanSub8698A=0.648C=0.352
The Genome Aggregation DatabaseAmericanSub838A=0.650C=0.350
The Genome Aggregation DatabaseEast AsianSub1614A=0.546C=0.454
The Genome Aggregation DatabaseEuropeSub18452A=0.739C=0.260
The Genome Aggregation DatabaseGlobalStudy-wide29904A=0.698C=0.301
The Genome Aggregation DatabaseOtherSub302A=0.640C=0.360
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.680C=0.319
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.749C=0.251
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs80404670.000428alcohol dependence21314694

eQTL of rs8040467 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs8040467 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr157042573570426014E067-26931
chr157048742670489875E06734481
chr157040330070404714E068-48231
chr157042546570425537E068-27408
chr157044859070448739E068-4206
chr157045317170453511E068226
chr157045354470453747E068599
chr157045379970453884E068854
chr157045720870458983E0684263
chr157044859070448739E069-4206
chr157044890670449697E069-3248
chr157040319170403296E070-49649
chr157040330070404714E070-48231
chr157040547770406113E070-46832
chr157040612570406213E070-46732
chr157040625870406313E070-46632
chr157040635870406535E070-46410
chr157040660970406808E070-46137
chr157040685970407013E070-45932
chr157040704770407099E070-45846
chr157040736870407418E070-45527
chr157040743170407481E070-45464
chr157040754170407597E070-45348
chr157040765770407747E070-45198
chr157040786070408002E070-44943
chr157040801470408347E070-44598
chr157041194070411985E070-40960
chr157041213370412183E070-40762
chr157041235270412491E070-40454
chr157041252970412623E070-40322
chr157041272670412787E070-40158
chr157041287170412932E070-40013
chr157041299770413037E070-39908
chr157041325370414494E070-38451
chr157041460970414707E070-38238
chr157041474670415079E070-37866
chr157041510970415301E070-37644
chr157041560770415668E070-37277
chr157041582370415902E070-37043
chr157041907270419144E070-33801
chr157041948470420664E070-32281
chr157042126970421324E070-31621
chr157042142070421470E070-31475
chr157042177570422046E070-30899
chr157042289570422981E070-29964
chr157042307570423148E070-29797
chr157042320170423294E070-29651
chr157042377070423944E070-29001
chr157042400070424372E070-28573
chr157042442570424879E070-28066
chr157042491670424976E070-27969
chr157042514470425305E070-27640
chr157042546570425537E070-27408
chr157042573570426014E070-26931
chr157042618170426231E070-26714
chr157043023970430300E070-22645
chr157044071970440779E070-12166
chr157044083370441222E070-11723
chr157044129870441374E070-11571
chr157044614270446364E070-6581
chr157044640970447739E070-5206
chr157044782870447875E070-5070
chr157044793570447979E070-4966
chr157044802270448107E070-4838
chr157044841370448538E070-4407
chr157044859070448739E070-4206
chr157044890670449697E070-3248
chr157045720870458983E0704263
chr157047321270474223E07020267
chr157048220170482415E07029256
chr157048248870482810E07029543
chr157048288970482996E07029944
chr157048329370483702E07030348
chr157048742670489875E07034481
chr157048991370491066E07036968
chr157049115970491213E07038214
chr157049122270491568E07038277
chr157049157770491679E07038632
chr157049176270492539E07038817
chr157049257170493823E07039626
chr157049383370493988E07040888
chr157049411570494198E07041170
chr157049452570494579E07041580
chr157049474270494816E07041797
chr157049497170495139E07042026
chr157049516070495210E07042215
chr157049523070495352E07042285
chr157049578170495884E07042836
chr157040330070404714E071-48231
chr157041877570418954E071-33991
chr157041907270419144E071-33801
chr157041948470420664E071-32281
chr157045354470453747E071599
chr157045379970453884E071854
chr157045394170454074E071996
chr157048742670489875E07134481
chr157040330070404714E072-48231
chr157042573570426014E072-26931
chr157042618170426231E072-26714
chr157048742670489875E07234481
chr157045317170453511E073226
chr157045354470453747E073599
chr157048742670489875E07334481
chr157040330070404714E074-48231
chr157041948470420664E074-32281
chr157042546570425537E074-27408
chr157042573570426014E074-26931
chr157042618170426231E074-26714
chr157048742670489875E07434481
chr157040319170403296E081-49649
chr157040330070404714E081-48231
chr157041474670415079E081-37866
chr157041510970415301E081-37644
chr157041605670416100E081-36845
chr157041611670416176E081-36769
chr157044017770440466E081-12479
chr157044071970440779E081-12166
chr157044083370441222E081-11723
chr157044129870441374E081-11571
chr157044614270446364E081-6581
chr157044640970447739E081-5206
chr157044782870447875E081-5070
chr157044793570447979E081-4966
chr157044802270448107E081-4838
chr157044841370448538E081-4407
chr157044859070448739E081-4206
chr157044890670449697E081-3248
chr157044978070449945E081-3000
chr157045010170450174E081-2771
chr157045024470450342E081-2603
chr157045039470450478E081-2467
chr157045061570450676E081-2269
chr157045073270450808E081-2137
chr157045081170450920E081-2025
chr157045317170453511E081226
chr157045354470453747E081599
chr157045379970453884E081854
chr157045720870458983E0814263
chr157047278670472860E08119841
chr157047289170473002E08119946
chr157047300670473111E08120061
chr157047321270474223E08120267
chr157048742670489875E08134481
chr157048991370491066E08136968
chr157049115970491213E08138214
chr157049122270491568E08138277
chr157049157770491679E08138632
chr157049176270492539E08138817
chr157049257170493823E08139626
chr157049383370493988E08140888
chr157049411570494198E08141170
chr157049452570494579E08141580
chr157049474270494816E08141797
chr157049497170495139E08142026
chr157049516070495210E08142215
chr157049523070495352E08142285
chr157049821870498274E08145273
chr157049873170498803E08145786
chr157049885970498933E08145914
chr157049915270499313E08146207
chr157040330070404714E082-48231
chr157041325370414494E082-38451
chr157044640970447739E082-5206
chr157044782870447875E082-5070
chr157044793570447979E082-4966
chr157044802270448107E082-4838
chr157044841370448538E082-4407
chr157044859070448739E082-4206
chr157044890670449697E082-3248
chr157044978070449945E082-3000
chr157045010170450174E082-2771
chr157045024470450342E082-2603
chr157045039470450478E082-2467
chr157045061570450676E082-2269
chr157045073270450808E082-2137
chr157045720870458983E0824263
chr157047321270474223E08220267
chr157048288970482996E08229944
chr157048329370483702E08230348
chr157049115970491213E08238214
chr157049122270491568E08238277
chr157049157770491679E08238632
chr157049176270492539E08238817
chr157049411570494198E08241170
chr157049452570494579E08241580
chr157049474270494816E08241797
chr157049497170495139E08242026
chr157049516070495210E08242215