rs804292

Homo sapiens
G>A
NEIL2 : 3 Prime UTR Variant
Check p-value
SNV (Single Nucleotide Variation)
G==0216 (6480/29912,GnomAD)
G==0248 (7240/29118,TOPMED)
G==0173 (866/5008,1000G)
G==0261 (1005/3854,ALSPAC)
G==0257 (954/3708,TWINSUK)
chr8:11786406 (GRCh38.p7) (8p23.1)
AD | ND
GWASdb2 | GWASCatalog
2   publication(s)
See rs on genome
186 Enhancers around
37 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 8NC_000008.11:g.11786406G>A
GRCh37.p13 chr 8NC_000008.10:g.11643915G>A

Gene: NEIL2, nei like DNA glycosylase 2(plus strand)

Molecule type Change Amino acid[Codon] SO Term
NEIL2 transcript variant 1NM_145043.2:c.N/A3 Prime UTR Variant
NEIL2 transcript variant 2NM_001135746.1:c.N/A3 Prime UTR Variant
NEIL2 transcript variant 3NM_001135747.1:c.N/A3 Prime UTR Variant
NEIL2 transcript variant 4NM_001135748.1:c.N/A3 Prime UTR Variant
NEIL2 transcript variant X1XM_017013301.1:c.N/A3 Prime UTR Variant
NEIL2 transcript variant X2XM_005272382.2:c.N/A3 Prime UTR Variant
NEIL2 transcript variant X3XM_005272383.2:c.N/A3 Prime UTR Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.238A=0.762
1000GenomesAmericanSub694G=0.160A=0.840
1000GenomesEast AsianSub1008G=0.001A=0.999
1000GenomesEuropeSub1006G=0.249A=0.751
1000GenomesGlobalStudy-wide5008G=0.173A=0.827
1000GenomesSouth AsianSub978G=0.190A=0.810
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.261A=0.739
The Genome Aggregation DatabaseAfricanSub8696G=0.251A=0.749
The Genome Aggregation DatabaseAmericanSub836G=0.140A=0.860
The Genome Aggregation DatabaseEast AsianSub1620G=0.001A=0.999
The Genome Aggregation DatabaseEuropeSub18458G=0.222A=0.777
The Genome Aggregation DatabaseGlobalStudy-wide29912G=0.216A=0.783
The Genome Aggregation DatabaseOtherSub302G=0.240A=0.760
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.248A=0.751
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.257A=0.743
PMID Title Author Journal
28472449Exploring genetic associations with ceRNA regulation in the human genome.Li MJNucleic Acids Res
23942779A genome-wide association study of behavioral disinhibition.McGue MBehav Genet

P-Value

SNP ID p-value Traits Study
rs8042920.000002alcohol dependence23942779
rs8042923.00E-06nicotine use23942779

eQTL of rs804292 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs804292 in Fetal Brain

Probe ID Position Gene beta p-value
cg26752888chr8:11627280NEIL20.02166276539295174.0039e-23

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr81162269711623689E067-20226
chr81162864111628757E067-15158
chr81166225411662360E06718339
chr81166240911662636E06718494
chr81166281911663301E06718904
chr81166438211664432E06720467
chr81166456811664801E06720653
chr81166826511668406E06724350
chr81167019811670286E06726283
chr81167039011670573E06726475
chr81167067211670778E06726757
chr81167103611671774E06727121
chr81167625311676323E06732338
chr81167678611676836E06732871
chr81167699311677055E06733078
chr81167758011677630E06733665
chr81167767711678360E06733762
chr81167848011678708E06734565
chr81162269711623689E068-20226
chr81162884011628910E068-15005
chr81162895011629000E068-14915
chr81165860711658819E06814692
chr81165909511659285E06815180
chr81166215611662217E06818241
chr81166225411662360E06818339
chr81166240911662636E06818494
chr81166281911663301E06818904
chr81166438211664432E06820467
chr81166456811664801E06820653
chr81167019811670286E06826283
chr81167039011670573E06826475
chr81167067211670778E06826757
chr81167103611671774E06827121
chr81167625311676323E06832338
chr81165860711658819E06914692
chr81165909511659285E06915180
chr81166240911662636E06918494
chr81167019811670286E06926283
chr81167039011670573E06926475
chr81167067211670778E06926757
chr81167103611671774E06927121
chr81167430111674431E06930386
chr81167572111675764E06931806
chr81167625311676323E06932338
chr81167678611676836E06932871
chr81167758011677630E06933665
chr81167767711678360E06933762
chr81167848011678708E06934565
chr81167876911678897E06934854
chr81169152011692140E06947605
chr81162864111628757E070-15158
chr81162884011628910E070-15005
chr81162895011629000E070-14915
chr81165837811658535E07014463
chr81165860711658819E07014692
chr81165909511659285E07015180
chr81166710311667182E07023188
chr81166723411667418E07023319
chr81162269711623689E071-20226
chr81162884011628910E071-15005
chr81162895011629000E071-14915
chr81162904211629086E071-14829
chr81162915111629332E071-14583
chr81166215611662217E07118241
chr81166225411662360E07118339
chr81166240911662636E07118494
chr81166438211664432E07120467
chr81166456811664801E07120653
chr81167019811670286E07126283
chr81167039011670573E07126475
chr81167067211670778E07126757
chr81167103611671774E07127121
chr81167183511672076E07127920
chr81167515811675208E07131243
chr81167572111675764E07131806
chr81167625311676323E07132338
chr81167758011677630E07133665
chr81167767711678360E07133762
chr81168623011686416E07142315
chr81168655911686674E07142644
chr81168698211687059E07143067
chr81169152011692140E07147605
chr81162269711623689E072-20226
chr81162548511626815E072-17100
chr81162904211629086E072-14829
chr81162915111629332E072-14583
chr81166438211664432E07220467
chr81167019811670286E07226283
chr81167039011670573E07226475
chr81167067211670778E07226757
chr81167103611671774E07227121
chr81167430111674431E07230386
chr81167758011677630E07233665
chr81167767711678360E07233762
chr81169109711691433E07247182
chr81169152011692140E07247605
chr81169220111692293E07248286
chr81162269711623689E073-20226
chr81162864111628757E073-15158
chr81162884011628910E073-15005
chr81162895011629000E073-14915
chr81162904211629086E073-14829
chr81162915111629332E073-14583
chr81166215611662217E07318241
chr81166225411662360E07318339
chr81166281911663301E07318904
chr81166438211664432E07320467
chr81166456811664801E07320653
chr81166888711668939E07324972
chr81166897711669166E07325062
chr81166923611669281E07325321
chr81166935911669574E07325444
chr81167019811670286E07326283
chr81167039011670573E07326475
chr81167758011677630E07333665
chr81167767711678360E07333762
chr81162269711623689E074-20226
chr81162864111628757E074-15158
chr81162884011628910E074-15005
chr81162895011629000E074-14915
chr81162904211629086E074-14829
chr81162915111629332E074-14583
chr81165837811658535E07414463
chr81166215611662217E07418241
chr81166240911662636E07418494
chr81166281911663301E07418904
chr81166438211664432E07420467
chr81166456811664801E07420653
chr81167019811670286E07426283
chr81167039011670573E07426475
chr81167067211670778E07426757
chr81167103611671774E07427121
chr81167430111674431E07430386
chr81167625311676323E07432338
chr81167678611676836E07432871
chr81167699311677055E07433078
chr81167758011677630E07433665
chr81167767711678360E07433762
chr81167848011678708E07434565
chr81167876911678897E07434854
chr81168102711681226E07437112
chr81168130111681351E07437386
chr81168698211687059E07443067
chr81168713211687326E07443217
chr81168736711687522E07443452
chr81168774111687890E07443826
chr81168949211689582E07445577
chr81169152011692140E07447605
chr81162864111628757E081-15158
chr81162884011628910E081-15005
chr81162895011629000E081-14915
chr81162904211629086E081-14829
chr81162915111629332E081-14583
chr81162990111629951E081-13964
chr81162996311630032E081-13883
chr81163012411630319E081-13596
chr81163034311630450E081-13465
chr81163064311630795E081-13120
chr81163083511630885E081-13030
chr81163093011631044E081-12871
chr81163113311631437E081-12478
chr81164654811646665E0812633
chr81164678011646998E0812865
chr81164703311647918E0813118
chr81164900811649176E0815093
chr81164963611649910E0815721
chr81164992711649982E0816012
chr81165457011655136E08110655
chr81165520811655386E08111293
chr81165909511659285E08115180
chr81166456811664801E08120653
chr81166710311667182E08123188
chr81162996311630032E082-13883
chr81163012411630319E082-13596
chr81163034311630450E082-13465
chr81163064311630795E082-13120
chr81163083511630885E082-13030
chr81163093011631044E082-12871
chr81163113311631437E082-12478
chr81164703311647918E0823118
chr81164797311648115E0824058
chr81165860711658819E08214692
chr81165909511659285E08215180
chr81166710311667182E08223188
chr81166723411667418E08223319
chr81166750811667631E08223593










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr81162685111628557E067-15358
chr81165946411662054E06715549
chr81166488611666981E06720971
chr81166865711668763E06724742
chr81162685111628557E068-15358
chr81165946411662054E06815549
chr81166488611666981E06820971
chr81166865711668763E06824742
chr81162685111628557E069-15358
chr81165946411662054E06915549
chr81166488611666981E06920971
chr81166865711668763E06924742
chr81162685111628557E070-15358
chr81165946411662054E07015549
chr81166488611666981E07020971
chr81162685111628557E071-15358
chr81165946411662054E07115549
chr81166488611666981E07120971
chr81166865711668763E07124742
chr81162685111628557E072-15358
chr81165946411662054E07215549
chr81166488611666981E07220971
chr81166865711668763E07224742
chr81162685111628557E073-15358
chr81165946411662054E07315549
chr81166488611666981E07320971
chr81166865711668763E07324742
chr81162685111628557E074-15358
chr81165946411662054E07415549
chr81166488611666981E07420971
chr81166865711668763E07424742
chr81162685111628557E081-15358
chr81165946411662054E08115549
chr81166488611666981E08120971
chr81162685111628557E082-15358
chr81165946411662054E08215549
chr81166488611666981E08220971