rs8060235

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0432 (12962/29942,GnomAD)
A=0425 (2126/5008,1000G)
A=0432 (1665/3854,ALSPAC)
A=0419 (1554/3708,TWINSUK)
chr16:54231853 (GRCh38.p7) (16q12.2)
AD
GWASdb2
1   publication(s)
See rs on genome
48 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 16NC_000016.10:g.54231853G>A
GRCh37.p13 chr 16NC_000016.9:g.54265765G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.617A=0.383
1000GenomesAmericanSub694G=0.500A=0.500
1000GenomesEast AsianSub1008G=0.405A=0.595
1000GenomesEuropeSub1006G=0.571A=0.429
1000GenomesGlobalStudy-wide5008G=0.575A=0.425
1000GenomesSouth AsianSub978G=0.760A=0.240
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.568A=0.432
The Genome Aggregation DatabaseAfricanSub8710G=0.605A=0.395
The Genome Aggregation DatabaseAmericanSub838G=0.450A=0.550
The Genome Aggregation DatabaseEast AsianSub1620G=0.388A=0.612
The Genome Aggregation DatabaseEuropeSub18472G=0.568A=0.431
The Genome Aggregation DatabaseGlobalStudy-wide29942G=0.567A=0.432
The Genome Aggregation DatabaseOtherSub302G=0.670A=0.330
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.581A=0.419
PMID Title Author Journal
21529783A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.Heath ACBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs80602355.8E-05alcoholism (heaviness of drinking)21529783

eQTL of rs8060235 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs8060235 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr165427345354273690E0677688
chr165427389254274889E0678127
chr165427496654275156E0679201
chr165427563054276057E0679865
chr165422880154229028E068-36737
chr165423879054238995E068-26770
chr165423927154239315E068-26450
chr165427326354273414E0687498
chr165427345354273690E0687688
chr165427389254274889E0688127
chr165427496654275156E0689201
chr165427526054275357E0689495
chr165427326354273414E0697498
chr165427345354273690E0697688
chr165427389254274889E0698127
chr165427389254274889E0708127
chr165427496654275156E0709201
chr165427526054275357E0709495
chr165431095554311013E07045190
chr165431101954311069E07045254
chr165431132354311373E07045558
chr165431141054311463E07045645
chr165431175954312683E07045994
chr165422880154229028E071-36737
chr165427326354273414E0717498
chr165427345354273690E0717688
chr165427389254274889E0718127
chr165427496654275156E0719201
chr165427526054275357E0719495
chr165427563054276057E0719865
chr165427345354273690E0727688
chr165427389254274889E0728127
chr165427563054276057E0729865
chr165423394954234245E074-31520
chr165423436054234682E074-31083
chr165423480254234867E074-30898
chr165423500454235054E074-30711
chr165423927154239315E074-26450
chr165427326354273414E0747498
chr165427345354273690E0747688
chr165427389254274889E0748127
chr165427496654275156E0749201
chr165427526054275357E0749495
chr165424427254244348E081-21417
chr165424576954245819E081-19946
chr165424981554249961E082-15804
chr165425008954250178E082-15587
chr165425018754250526E082-15239