rs8126263

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0112 (3361/29970,GnomAD)
T=0097 (2841/29118,TOPMED)
T=0150 (752/5008,1000G)
T=0105 (403/3854,ALSPAC)
T=0117 (432/3708,TWINSUK)
chr20:23785640 (GRCh38.p7) (20p11.21)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 20NC_000020.11:g.23785640C>T
GRCh37.p13 chr 20NC_000020.10:g.23766277C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.950T=0.050
1000GenomesAmericanSub694C=0.720T=0.280
1000GenomesEast AsianSub1008C=0.714T=0.286
1000GenomesEuropeSub1006C=0.862T=0.138
1000GenomesGlobalStudy-wide5008C=0.850T=0.150
1000GenomesSouth AsianSub978C=0.930T=0.070
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.895T=0.105
The Genome Aggregation DatabaseAfricanSub8722C=0.946T=0.054
The Genome Aggregation DatabaseAmericanSub836C=0.720T=0.280
The Genome Aggregation DatabaseEast AsianSub1614C=0.725T=0.275
The Genome Aggregation DatabaseEuropeSub18496C=0.881T=0.118
The Genome Aggregation DatabaseGlobalStudy-wide29970C=0.887T=0.112
The Genome Aggregation DatabaseOtherSub302C=0.900T=0.100
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.902T=0.097
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.883T=0.117
PMID Title Author Journal
22072270Genome-wide association study identifies 5q21 and 9p24.1 (KDM4C) loci associated with alcohol withdrawal symptoms.Wang KSJ Neural Transm (Vienna)

P-Value

SNP ID p-value Traits Study
rs81262635.66E-06alcohol withdrawal symptoms22072270

eQTL of rs8126263 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs8126263 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.