SNP Detail Info-rs8127865

Sequence Name	Change(s)
GRCh38.p7 chr 21	NC_000021.9:g.21271400A>G
GRCh37.p13 chr 21	NC_000021.8:g.22643720A>G

Molecule type	Change	Amino acid[Codon]	SO Term
NCAM2 transcript	NM_004540.3:c.	N/A	Intron Variant
NCAM2 transcript variant X1	XM_011529575.2:c.	N/A	Intron Variant
NCAM2 transcript variant X2	XM_011529576.2:c.	N/A	Intron Variant
NCAM2 transcript variant X4	XM_011529579.2:c.	N/A	Intron Variant
NCAM2 transcript variant X5	XM_011529580.2:c.	N/A	Intron Variant
NCAM2 transcript variant X6	XM_011529581.2:c.	N/A	Intron Variant
NCAM2 transcript variant X8	XM_011529582.2:c.	N/A	Intron Variant
NCAM2 transcript variant X3	XM_017028353.1:c.	N/A	Intron Variant
NCAM2 transcript variant X7	XM_017028354.1:c.	N/A	Intron Variant
NCAM2 transcript variant X9	XM_017028355.1:c.	N/A	Intron Variant
NCAM2 transcript variant X10	XM_017028356.1:c.	N/A	Intron Variant
NCAM2 transcript variant X12	XM_017028357.1:c.	N/A	Intron Variant
NCAM2 transcript variant X13	XM_017028358.1:c.	N/A	Intron Variant
NCAM2 transcript variant X11	XM_011529585.2:c.	N/A	Genic Upstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.095	G=0.905
1000Genomes	American	Sub	694	A=0.130	G=0.870
1000Genomes	East Asian	Sub	1008	A=0.006	G=0.994
1000Genomes	Europe	Sub	1006	A=0.222	G=0.778
1000Genomes	Global	Study-wide	5008	A=0.105	G=0.895
1000Genomes	South Asian	Sub	978	A=0.080	G=0.920
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.203	G=0.797
The Genome Aggregation Database	African	Sub	8722	A=0.108	G=0.892
The Genome Aggregation Database	American	Sub	836	A=0.150	G=0.850
The Genome Aggregation Database	East Asian	Sub	1620	A=0.004	G=0.996
The Genome Aggregation Database	Europe	Sub	18484	A=0.211	G=0.789
The Genome Aggregation Database	Global	Study-wide	29962	A=0.168	G=0.831
The Genome Aggregation Database	Other	Sub	300	A=0.240	G=0.760
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.159	G=0.840
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.199	G=0.801

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs8127865	0.000052	alcoholism	pha002893
rs8127865	0.000052	alcohol dependence	20201924
rs8127865	0.00085	Alcohol dependence (early age of onset)	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr21	22598423	22598488	E067	-45232
chr21	22598718	22598785	E067	-44935
chr21	22598909	22599069	E067	-44651
chr21	22599140	22599188	E067	-44532
chr21	22609405	22609501	E067	-34219
chr21	22598423	22598488	E068	-45232
chr21	22598718	22598785	E068	-44935
chr21	22598909	22599069	E068	-44651
chr21	22599140	22599188	E068	-44532
chr21	22604439	22604511	E068	-39209
chr21	22608034	22608078	E068	-35642
chr21	22609405	22609501	E068	-34219
chr21	22627609	22627745	E068	-15975
chr21	22629346	22629397	E068	-14323
chr21	22640512	22640562	E068	-3158
chr21	22679396	22679436	E068	35676
chr21	22598423	22598488	E069	-45232
chr21	22598909	22599069	E069	-44651
chr21	22599140	22599188	E069	-44532
chr21	22629346	22629397	E069	-14323
chr21	22640512	22640562	E069	-3158
chr21	22679396	22679436	E069	35676
chr21	22598423	22598488	E071	-45232
chr21	22598718	22598785	E071	-44935
chr21	22598909	22599069	E071	-44651
chr21	22599140	22599188	E071	-44532
chr21	22609405	22609501	E071	-34219
chr21	22627514	22627560	E071	-16160
chr21	22627609	22627745	E071	-15975
chr21	22629346	22629397	E071	-14323
chr21	22679396	22679436	E071	35676
chr21	22604702	22605772	E072	-37948
chr21	22640512	22640562	E073	-3158
chr21	22598423	22598488	E074	-45232
chr21	22598718	22598785	E074	-44935
chr21	22598909	22599069	E074	-44651
chr21	22599140	22599188	E074	-44532
chr21	22604702	22605772	E074	-37948
chr21	22627514	22627560	E074	-16160
chr21	22627609	22627745	E074	-15975
chr21	22629346	22629397	E074	-14323
chr21	22642450	22642507	E074	-1213
chr21	22679396	22679436	E074	35676

rs8127865