| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 21 | NC_000021.9:g.21776930A>G |
| GRCh37.p13 chr 21 | NC_000021.8:g.23149250A>G |
| Molecule type | Change | Amino acid[Codon] | SO Term |
|---|---|---|---|
| LINC01425 transcript | NR_109958.1:n. | N/A | Intron Variant |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.612 | G=0.388 |
| 1000Genomes | American | Sub | 694 | A=0.890 | G=0.110 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.933 | G=0.067 |
| 1000Genomes | Europe | Sub | 1006 | A=0.903 | G=0.097 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.841 | G=0.159 |
| 1000Genomes | South Asian | Sub | 978 | A=0.960 | G=0.040 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.915 | G=0.085 |
| The Genome Aggregation Database | African | Sub | 8620 | A=0.638 | G=0.362 |
| The Genome Aggregation Database | American | Sub | 832 | A=0.920 | G=0.080 |
| The Genome Aggregation Database | East Asian | Sub | 1608 | A=0.945 | G=0.055 |
| The Genome Aggregation Database | Europe | Sub | 18386 | A=0.928 | G=0.071 |
| The Genome Aggregation Database | Global | Study-wide | 29748 | A=0.844 | G=0.155 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.880 | G=0.120 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.919 | G=0.081 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 20158304 | A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations. | Lind PA | Twin Res Hum Genet |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs8131512 | 2.1E-06 | alcohol and nictotine co-dependence | 20158304 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.