rs825820

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
T==0315 (9403/29842,GnomAD)
T==0201 (1009/5008,1000G)
T==0404 (1556/3854,ALSPAC)
T==0418 (1549/3708,TWINSUK)
chr10:53661544 (GRCh38.p7) (10q21.1)
AD
GWASdb2
1   publication(s)
See rs on genome
4 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.53661544T>C
GRCh37.p13 chr 10NC_000010.10:g.55421304T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.143C=0.857
1000GenomesAmericanSub694T=0.330C=0.670
1000GenomesEast AsianSub1008T=0.016C=0.984
1000GenomesEuropeSub1006T=0.393C=0.607
1000GenomesGlobalStudy-wide5008T=0.201C=0.799
1000GenomesSouth AsianSub978T=0.180C=0.820
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.404C=0.596
The Genome Aggregation DatabaseAfricanSub8668T=0.184C=0.816
The Genome Aggregation DatabaseAmericanSub834T=0.300C=0.700
The Genome Aggregation DatabaseEast AsianSub1618T=0.005C=0.995
The Genome Aggregation DatabaseEuropeSub18422T=0.404C=0.596
The Genome Aggregation DatabaseGlobalStudy-wide29842T=0.315C=0.684
The Genome Aggregation DatabaseOtherSub300T=0.370C=0.630
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.418C=0.582
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs8258200.000111alcohol dependence20201924

eQTL of rs825820 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs825820 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr105544216055442232E08120856
chr105544231455442439E08121010
chr105544248255442976E08121178
chr105544300155443067E08121697