rs838610

Homo sapiens
A>C
SLC9A9 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A==0285 (8521/29870,GnomAD)
A==0265 (7735/29118,TOPMED)
A==0348 (1744/5008,1000G)
A==0336 (1295/3854,ALSPAC)
A==0341 (1263/3708,TWINSUK)
chr3:143459684 (GRCh38.p7) (3q24)
AD
GWASdb2
1   publication(s)
See rs on genome
30 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.143459684A>C
GRCh37.p13 chr 3NC_000003.11:g.143178526A>C
SLC9A9 RefSeqGeneNG_017077.1:g.393848T>G

Gene: SLC9A9, solute carrier family 9 member A9(minus strand)

Molecule type Change Amino acid[Codon] SO Term
SLC9A9 transcriptNM_173653.3:c.N/AIntron Variant
SLC9A9 transcript variant X3XM_011512703.2:c.N/AIntron Variant
SLC9A9 transcript variant X1XM_017006202.1:c.N/AIntron Variant
SLC9A9 transcript variant X2XM_017006203.1:c.N/AIntron Variant
SLC9A9 transcript variant X4XM_011512704.2:c.N/AGenic Downstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.147C=0.853
1000GenomesAmericanSub694A=0.390C=0.610
1000GenomesEast AsianSub1008A=0.499C=0.501
1000GenomesEuropeSub1006A=0.338C=0.662
1000GenomesGlobalStudy-wide5008A=0.348C=0.652
1000GenomesSouth AsianSub978A=0.440C=0.560
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.336C=0.664
The Genome Aggregation DatabaseAfricanSub8714A=0.161C=0.839
The Genome Aggregation DatabaseAmericanSub832A=0.450C=0.550
The Genome Aggregation DatabaseEast AsianSub1608A=0.503C=0.497
The Genome Aggregation DatabaseEuropeSub18414A=0.316C=0.684
The Genome Aggregation DatabaseGlobalStudy-wide29870A=0.285C=0.714
The Genome Aggregation DatabaseOtherSub302A=0.390C=0.610
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.265C=0.734
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.341C=0.659
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs8386100.000423alcohol dependence20201924

eQTL of rs838610 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs838610 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3143137631143137729E067-40797
chr3143220226143220980E06741700
chr3143137631143137729E068-40797
chr3143137249143137299E069-41227
chr3143137631143137729E069-40797
chr3143138557143138680E069-39846
chr3143220226143220980E06941700
chr3143226677143226849E06948151
chr3143226971143227360E06948445
chr3143220226143220980E07041700
chr3143137249143137299E071-41227
chr3143137631143137729E071-40797
chr3143138557143138680E071-39846
chr3143163427143163568E071-14958
chr3143169923143169973E071-8553
chr3143220226143220980E07141700
chr3143221014143221175E07142488
chr3143226677143226849E07148151
chr3143137249143137299E072-41227
chr3143137631143137729E072-40797
chr3143138557143138680E072-39846
chr3143220226143220980E07241700
chr3143137249143137299E073-41227
chr3143137631143137729E073-40797
chr3143138557143138680E073-39846
chr3143137249143137299E074-41227
chr3143137631143137729E074-40797
chr3143138557143138680E074-39846
chr3143169923143169973E074-8553
chr3143220226143220980E07441700