rs843511

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
C==0148 (4451/29956,GnomAD)
C==0162 (4730/29118,TOPMED)
C==0183 (916/5008,1000G)
C==0092 (356/3854,ALSPAC)
C==0103 (381/3708,TWINSUK)
chr3:196687288 (GRCh38.p7) (3q29)
AD
GWASdb2
1   publication(s)
See rs on genome
21 Enhancers around
23 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.196687288C>T
GRCh37.p13 chr 3NC_000003.11:g.196414159C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.235T=0.765
1000GenomesAmericanSub694C=0.110T=0.890
1000GenomesEast AsianSub1008C=0.286T=0.714
1000GenomesEuropeSub1006C=0.100T=0.900
1000GenomesGlobalStudy-wide5008C=0.183T=0.817
1000GenomesSouth AsianSub978C=0.150T=0.850
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.092T=0.908
The Genome Aggregation DatabaseAfricanSub8702C=0.222T=0.778
The Genome Aggregation DatabaseAmericanSub838C=0.130T=0.870
The Genome Aggregation DatabaseEast AsianSub1618C=0.262T=0.738
The Genome Aggregation DatabaseEuropeSub18496C=0.105T=0.894
The Genome Aggregation DatabaseGlobalStudy-wide29956C=0.148T=0.851
The Genome Aggregation DatabaseOtherSub302C=0.110T=0.890
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.162T=0.837
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.103T=0.897
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs8435110.000431alcohol dependence21314694

eQTL of rs843511 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs843511 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3196377611196377675E067-36484
chr3196377687196378315E067-35844
chr3196392788196393596E067-20563
chr3196394509196394591E067-19568
chr3196377611196377675E069-36484
chr3196377687196378315E069-35844
chr3196392788196393596E069-20563
chr3196440542196440590E06926383
chr3196377687196378315E071-35844
chr3196378777196378997E071-35162
chr3196392788196393596E071-20563
chr3196415041196415682E071882
chr3196415725196415786E0711566
chr3196440542196440590E07126383
chr3196392788196393596E072-20563
chr3196394509196394591E072-19568
chr3196415041196415682E072882
chr3196392788196393596E073-20563
chr3196415725196415786E0731566
chr3196437517196437567E07323358
chr3196440542196440590E08126383






Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr3196365878196367641E067-46518
chr3196438361196440153E06724202
chr3196365878196367641E068-46518
chr3196367748196367898E068-46261
chr3196438361196440153E06824202
chr3196365878196367641E069-46518
chr3196367748196367898E069-46261
chr3196438361196440153E06924202
chr3196365878196367641E070-46518
chr3196438361196440153E07024202
chr3196365878196367641E071-46518
chr3196367748196367898E071-46261
chr3196438361196440153E07124202
chr3196365878196367641E072-46518
chr3196367748196367898E072-46261
chr3196438361196440153E07224202
chr3196365878196367641E073-46518
chr3196367748196367898E073-46261
chr3196438361196440153E07324202
chr3196365878196367641E074-46518
chr3196438361196440153E07424202
chr3196365878196367641E082-46518
chr3196438361196440153E08224202