SNP Detail Info-rs854061

Organism: Homo sapiens

Alleles: G>A / G>C

Gene : Feature

LOC105375409 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0097 (2908/29980,GnomAD)
G==0097 (2837/29118,TOPMED)
G==0148 (743/5008,1000G)

Position: chr7:95676056 (GRCh38.p7) (7q21.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Molecule type	Change	Amino acid[Codon]	SO Term
LOC105375409 transcript variant X2	XR_927773.2:n.	N/A	Intron Variant
LOC105375409 transcript variant X2	XR_927774.2:n.	N/A	Intron Variant
LOC105375409 transcript variant X1	XR_927772.2:n.	N/A	Genic Downstream Transcript Variant
LOC105375409 transcript variant X4	XR_927775.2:n.	N/A	Genic Downstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.040	A=0.960
1000Genomes	American	Sub	694	G=0.210	A=0.790
1000Genomes	East Asian	Sub	1008	G=0.264	A=0.736
1000Genomes	Europe	Sub	1006	G=0.119	A=0.881
1000Genomes	Global	Study-wide	5008	G=0.148	A=0.852
1000Genomes	South Asian	Sub	978	G=0.160	A=0.840
The Genome Aggregation Database	African	Sub	8726	G=0.052	A=0.948
The Genome Aggregation Database	American	Sub	838	G=0.190	A=0.810
The Genome Aggregation Database	East Asian	Sub	1618	G=0.221	A=0.779
The Genome Aggregation Database	Europe	Sub	18496	G=0.103	A=0.896
The Genome Aggregation Database	Global	Study-wide	29980	G=0.097	A=0.903
The Genome Aggregation Database	Other	Sub	302	G=0.090	A=0.910
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.097	A=0.902

PMID	Title	Author	Journal
21703634	A meta-analysis of two genome-wide association studies identifies 3 new loci for alcohol dependence.	Wang KS	J Psychiatr Res

SNP ID	p-value	Traits	Study
rs854061	7.22E-05	alcohol dependence	21703634

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs854061