rs868702

Homo sapiens
G>A
SLC9A9 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0475 (14220/29928,GnomAD)
A=0475 (13855/29118,TOPMED)
A=0447 (2237/5008,1000G)
A=0345 (1331/3854,ALSPAC)
A=0358 (1328/3708,TWINSUK)
chr3:143366503 (GRCh38.p7) (3q24)
AD
GWASdb2
1   publication(s)
See rs on genome
82 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.143366503G>A
GRCh37.p13 chr 3NC_000003.11:g.143085345G>A
SLC9A9 RefSeqGeneNG_017077.1:g.487029C>T

Gene: SLC9A9, solute carrier family 9 member A9(minus strand)

Molecule type Change Amino acid[Codon] SO Term
SLC9A9 transcriptNM_173653.3:c.N/AIntron Variant
SLC9A9 transcript variant X3XM_011512703.2:c.N/AIntron Variant
SLC9A9 transcript variant X1XM_017006202.1:c.N/AIntron Variant
SLC9A9 transcript variant X2XM_017006203.1:c.N/AIntron Variant
SLC9A9 transcript variant X4XM_011512704.2:c.N/AGenic Downstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.334A=0.666
1000GenomesAmericanSub694G=0.530A=0.470
1000GenomesEast AsianSub1008G=0.670A=0.330
1000GenomesEuropeSub1006G=0.663A=0.337
1000GenomesGlobalStudy-wide5008G=0.553A=0.447
1000GenomesSouth AsianSub978G=0.630A=0.370
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.655A=0.345
The Genome Aggregation DatabaseAfricanSub8704G=0.377A=0.623
The Genome Aggregation DatabaseAmericanSub836G=0.520A=0.480
The Genome Aggregation DatabaseEast AsianSub1616G=0.660A=0.340
The Genome Aggregation DatabaseEuropeSub18472G=0.581A=0.418
The Genome Aggregation DatabaseGlobalStudy-wide29928G=0.524A=0.475
The Genome Aggregation DatabaseOtherSub300G=0.600A=0.400
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.524A=0.475
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.642A=0.358
PMID Title Author Journal
23089632A genome-wide association study of alcohol-dependence symptom counts in extended pedigrees identifies C15orf53.Wang JCMol Psychiatry

P-Value

SNP ID p-value Traits Study
rs8687020.00000173alcohol dependence23089632
rs8687020.0000258alcohol dependence23089632

eQTL of rs868702 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs868702 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3143048485143048606E067-36739
chr3143049956143050074E067-35271
chr3143050233143050516E067-34829
chr3143061820143062271E067-23074
chr3143062591143062850E067-22495
chr3143048485143048606E068-36739
chr3143048684143049027E068-36318
chr3143049079143049314E068-36031
chr3143049352143049544E068-35801
chr3143049735143049860E068-35485
chr3143049956143050074E068-35271
chr3143050233143050516E068-34829
chr3143062591143062850E068-22495
chr3143077113143077227E068-8118
chr3143077303143077353E068-7992
chr3143077831143077881E068-7464
chr3143078088143078343E068-7002
chr3143048485143048606E069-36739
chr3143048684143049027E069-36318
chr3143049079143049314E069-36031
chr3143049352143049544E069-35801
chr3143049735143049860E069-35485
chr3143049956143050074E069-35271
chr3143050233143050516E069-34829
chr3143077113143077227E069-8118
chr3143077303143077353E069-7992
chr3143077831143077881E069-7464
chr3143078088143078343E069-7002
chr3143049352143049544E071-35801
chr3143049735143049860E071-35485
chr3143049956143050074E071-35271
chr3143050233143050516E071-34829
chr3143050544143051256E071-34089
chr3143062591143062850E071-22495
chr3143077113143077227E071-8118
chr3143077303143077353E071-7992
chr3143048485143048606E072-36739
chr3143049352143049544E072-35801
chr3143049735143049860E072-35485
chr3143049956143050074E072-35271
chr3143050233143050516E072-34829
chr3143077113143077227E072-8118
chr3143077303143077353E072-7992
chr3143077831143077881E072-7464
chr3143078088143078343E072-7002
chr3143048485143048606E073-36739
chr3143048684143049027E073-36318
chr3143049735143049860E073-35485
chr3143049956143050074E073-35271
chr3143049079143049314E074-36031
chr3143049352143049544E074-35801
chr3143049735143049860E074-35485
chr3143049956143050074E074-35271
chr3143050233143050516E074-34829
chr3143062591143062850E074-22495
chr3143062891143063112E074-22233
chr3143063169143063255E074-22090
chr3143063497143063728E074-21617
chr3143077113143077227E074-8118
chr3143077303143077353E074-7992
chr3143077831143077881E074-7464
chr3143078088143078343E074-7002
chr3143047831143047907E081-37438
chr3143048485143048606E081-36739
chr3143048684143049027E081-36318
chr3143049079143049314E081-36031
chr3143049352143049544E081-35801
chr3143049735143049860E081-35485
chr3143049956143050074E081-35271
chr3143050233143050516E081-34829
chr3143050544143051256E081-34089
chr3143052386143052488E081-32857
chr3143047365143047584E082-37761
chr3143047831143047907E082-37438
chr3143048485143048606E082-36739
chr3143048684143049027E082-36318
chr3143049079143049314E082-36031
chr3143049352143049544E082-35801
chr3143049735143049860E082-35485
chr3143049956143050074E082-35271
chr3143051973143052092E082-33253
chr3143052386143052488E082-32857