rs871355

Homo sapiens
C>T
FUT10 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0297 (8901/29922,GnomAD)
T=0326 (9514/29118,TOPMED)
T=0417 (2090/5008,1000G)
T=0229 (881/3854,ALSPAC)
T=0216 (801/3708,TWINSUK)
chr8:33357908 (GRCh38.p7) (8p12)
CD
GWASdb2
1   publication(s)
See rs on genome
12 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 8NC_000008.11:g.33357908C>T
GRCh37.p13 chr 8NC_000008.10:g.33215426C>T

Gene: FUT10, fucosyltransferase 10(minus strand)

Molecule type Change Amino acid[Codon] SO Term
FUT10 transcriptNM_032664.3:c.N/AGenic Downstream Transcript Variant
FUT10 transcript variant X1XM_011544676.2:c.N/AIntron Variant
FUT10 transcript variant X2XM_011544677.2:c.N/AIntron Variant
FUT10 transcript variant X3XM_011544678.2:c.N/AIntron Variant
FUT10 transcript variant X6XM_011544681.2:c.N/AIntron Variant
FUT10 transcript variant X4XM_011544679.2:c.N/AGenic Downstream Transcript Variant
FUT10 transcript variant X5XM_011544680.2:c.N/AGenic Downstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.565T=0.435
1000GenomesAmericanSub694C=0.790T=0.210
1000GenomesEast AsianSub1008C=0.419T=0.581
1000GenomesEuropeSub1006C=0.794T=0.206
1000GenomesGlobalStudy-wide5008C=0.583T=0.417
1000GenomesSouth AsianSub978C=0.410T=0.590
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.771T=0.229
The Genome Aggregation DatabaseAfricanSub8692C=0.559T=0.441
The Genome Aggregation DatabaseAmericanSub836C=0.770T=0.230
The Genome Aggregation DatabaseEast AsianSub1612C=0.423T=0.577
The Genome Aggregation DatabaseEuropeSub18480C=0.791T=0.208
The Genome Aggregation DatabaseGlobalStudy-wide29922C=0.702T=0.297
The Genome Aggregation DatabaseOtherSub302C=0.700T=0.300
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.673T=0.326
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.784T=0.216
PMID Title Author Journal
23958962Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.Gelernter JMol Psychiatry

P-Value

SNP ID p-value Traits Study
rs8713550.0000043cocaine dependence(ALL)23958962
rs8713550.00077cocaine dependence(EA)23958962

eQTL of rs871355 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs871355 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr83324830133248416E07432875
chr83320122733201685E081-13741
chr83320169133202343E081-13083
chr83320239833202452E081-12974
chr83321003433211631E081-3795
chr83323160233231664E08116176
chr83320079833200875E082-14551
chr83320122733201685E082-13741
chr83320169133202343E082-13083
chr83320239833202452E082-12974
chr83320253233202648E082-12778
chr83322920533229255E08213779