rs871879

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0456 (13656/29888,GnomAD)
A=0494 (14390/29118,TOPMED)
A=0455 (2281/5008,1000G)
A=0435 (1676/3854,ALSPAC)
A=0440 (1632/3708,TWINSUK)
chr5:3677068 (GRCh38.p7) (5p15.33)
AD
GWASdb2
1   publication(s)
See rs on genome
10 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 5NC_000005.10:g.3677068G>A
GRCh37.p13 chr 5NC_000005.9:g.3677182G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.415A=0.585
1000GenomesAmericanSub694G=0.420A=0.580
1000GenomesEast AsianSub1008G=0.672A=0.328
1000GenomesEuropeSub1006G=0.637A=0.363
1000GenomesGlobalStudy-wide5008G=0.545A=0.455
1000GenomesSouth AsianSub978G=0.580A=0.420
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.565A=0.435
The Genome Aggregation DatabaseAfricanSub8674G=0.439A=0.561
The Genome Aggregation DatabaseAmericanSub836G=0.420A=0.580
The Genome Aggregation DatabaseEast AsianSub1618G=0.695A=0.305
The Genome Aggregation DatabaseEuropeSub18458G=0.582A=0.417
The Genome Aggregation DatabaseGlobalStudy-wide29888G=0.543A=0.456
The Genome Aggregation DatabaseOtherSub302G=0.630A=0.370
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.505A=0.494
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.560A=0.440
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs8718790.000214alcohol dependence21314694

eQTL of rs871879 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs871879 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr537093313709640E06932149
chr537096633709811E06932481
chr537098843709954E06932702
chr536958373695948E08118655
chr536960653696203E08118883
chr536967903697094E08119608
chr537093313709640E08132149
chr537096633709811E08132481
chr537098843709954E08132702
chr537096633709811E08232481