rs873196

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
C==0322 (9640/29924,GnomAD)
C==0299 (8728/29118,TOPMED)
C==0223 (1119/5008,1000G)
C==0396 (1526/3854,ALSPAC)
C==0402 (1491/3708,TWINSUK)
chr14:98379194 (GRCh38.p7) (14q32.2)
AD
GWASdb2
5   publication(s)
See rs on genome
45 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 14NC_000014.9:g.98379194C>T
GRCh37.p13 chr 14NC_000014.8:g.98845531C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.172T=0.828
1000GenomesAmericanSub694C=0.230T=0.770
1000GenomesEast AsianSub1008C=0.139T=0.861
1000GenomesEuropeSub1006C=0.377T=0.623
1000GenomesGlobalStudy-wide5008C=0.223T=0.777
1000GenomesSouth AsianSub978C=0.220T=0.780
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.396T=0.604
The Genome Aggregation DatabaseAfricanSub8712C=0.219T=0.781
The Genome Aggregation DatabaseAmericanSub836C=0.260T=0.740
The Genome Aggregation DatabaseEast AsianSub1620C=0.149T=0.851
The Genome Aggregation DatabaseEuropeSub18454C=0.388T=0.611
The Genome Aggregation DatabaseGlobalStudy-wide29924C=0.322T=0.677
The Genome Aggregation DatabaseOtherSub302C=0.320T=0.680
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.299T=0.700
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.402T=0.598
PMID Title Author Journal
26691610Parallel Analysis of 124 Universal SNPs for Human Identification by Targeted Semiconductor Sequencing.Zhang SSci Rep
22072270Genome-wide association study identifies 5q21 and 9p24.1 (KDM4C) loci associated with alcohol withdrawal symptoms.Wang KSJ Neural Transm (Vienna)
26522768Bone marrow chimerism detection using next generation sequencing based on single nucleotide polymorphisms following liver transplantation: comparison with short tandem repeat-PCR.Kim JAnn Lab Med
21611176Validation of a cost-efficient multi-purpose SNP panel for disease based research.Hou LPLoS One
28155888Forensic SNP Genotyping using Nanopore MinION Sequencing.Cornelis SSci Rep

P-Value

SNP ID p-value Traits Study
rs8731965.33E-05alcohol withdrawal symptoms22072270

eQTL of rs873196 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs873196 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr149887449998874599E06828968
chr149887466698874727E06829135
chr149881404998814175E069-31356
chr149881510998815150E069-30381
chr149880766998807775E070-37756
chr149880803998808093E070-37438
chr149880826298808315E070-37216
chr149881404998814175E070-31356
chr149881440498814536E070-30995
chr149881456298814692E070-30839
chr149882970798829783E070-15748
chr149882980498829864E070-15667
chr149882999098830062E070-15469
chr149883017098830224E070-15307
chr149883121398831294E070-14237
chr149883139998831621E070-13910
chr149883174398831851E070-13680
chr149883219298832242E070-13289
chr149884052098840879E070-4652
chr149884088298841017E070-4514
chr149887132498871714E07025793
chr149887176298871822E07026231
chr149881404998814175E071-31356
chr149881440498814536E071-30995
chr149881456298814692E071-30839
chr149881563198815695E071-29836
chr149887388998873939E07128358
chr149887449998874599E07128968
chr149887466698874727E07129135
chr149881404998814175E072-31356
chr149881440498814536E072-30995
chr149881456298814692E072-30839
chr149881510998815150E072-30381
chr149881440498814536E074-30995
chr149881456298814692E074-30839
chr149881510998815150E074-30381
chr149887449998874599E07428968
chr149887466698874727E07429135
chr149880766998807775E081-37756
chr149884052098840879E081-4652
chr149884088298841017E081-4514
chr149880803998808093E082-37438
chr149881372098813771E082-31760
chr149881404998814175E082-31356
chr149884088298841017E082-4514