rs883544

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
A==0395 (11821/29892,GnomAD)
A==0479 (13957/29118,TOPMED)
A==0390 (1954/5008,1000G)
A==0246 (948/3854,ALSPAC)
A==0234 (869/3708,TWINSUK)
chr17:39231160 (GRCh38.p7) (17q12)
AD
GWASdb2
1   publication(s)
See rs on genome
156 Enhancers around
22 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 17NC_000017.11:g.39231160A>G
GRCh37.p13 chr 17NC_000017.10:g.37387413A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.856G=0.144
1000GenomesAmericanSub694A=0.270G=0.730
1000GenomesEast AsianSub1008A=0.268G=0.732
1000GenomesEuropeSub1006A=0.258G=0.742
1000GenomesGlobalStudy-wide5008A=0.390G=0.610
1000GenomesSouth AsianSub978A=0.110G=0.890
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.246G=0.754
The Genome Aggregation DatabaseAfricanSub8704A=0.777G=0.223
The Genome Aggregation DatabaseAmericanSub838A=0.230G=0.770
The Genome Aggregation DatabaseEast AsianSub1616A=0.316G=0.684
The Genome Aggregation DatabaseEuropeSub18432A=0.233G=0.767
The Genome Aggregation DatabaseGlobalStudy-wide29892A=0.395G=0.604
The Genome Aggregation DatabaseOtherSub302A=0.200G=0.800
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.479G=0.520
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.234G=0.766
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs8835440.000907alcohol dependence20201924

eQTL of rs883544 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs883544 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr173734842437348489E067-38924
chr173734867037348738E067-38675
chr173734880437348947E067-38466
chr173734900237349052E067-38361
chr173735029337350390E067-37023
chr173735046737350585E067-36828
chr173735807437358143E067-29270
chr173735815937358329E067-29084
chr173735851037358565E067-28848
chr173735882437358905E067-28508
chr173735891837359013E067-28400
chr173735907737359147E067-28266
chr173735918337359234E067-28179
chr173736476537366392E067-21021
chr173736854037369402E067-18011
chr173737560637375656E067-11757
chr173740023037401826E06712817
chr173734258537342683E068-44730
chr173734291237342994E068-44419
chr173734303137343134E068-44279
chr173734316237343228E068-44185
chr173734338337343434E068-43979
chr173734363737344010E068-43403
chr173735807437358143E068-29270
chr173735815937358329E068-29084
chr173735851037358565E068-28848
chr173735882437358905E068-28508
chr173735891837359013E068-28400
chr173736476537366392E068-21021
chr173736666137366794E068-20619
chr173736684037366890E068-20523
chr173736715637367287E068-20126
chr173736839137368441E068-18972
chr173736854037369402E068-18011
chr173737560637375656E068-11757
chr173737586637376009E068-11404
chr173739181937392578E0684406
chr173739426537395286E0686852
chr173734842437348489E069-38924
chr173734867037348738E069-38675
chr173735807437358143E069-29270
chr173735815937358329E069-29084
chr173735851037358565E069-28848
chr173736317937363846E069-23567
chr173736455137364755E069-22658
chr173736476537366392E069-21021
chr173737520237375437E069-11976
chr173737560637375656E069-11757
chr173737586637376009E069-11404
chr173737608337376453E069-10960
chr173738702837388961E0690
chr173734996537350194E070-37219
chr173735029337350390E070-37023
chr173735807437358143E070-29270
chr173735815937358329E070-29084
chr173735851037358565E070-28848
chr173738702837388961E0700
chr173739259037392687E0705177
chr173735029337350390E071-37023
chr173735571037355764E071-31649
chr173735807437358143E071-29270
chr173735815937358329E071-29084
chr173735851037358565E071-28848
chr173735882437358905E071-28508
chr173735891837359013E071-28400
chr173736424237364302E071-23111
chr173736433837364548E071-22865
chr173736455137364755E071-22658
chr173736476537366392E071-21021
chr173736666137366794E071-20619
chr173736684037366890E071-20523
chr173737520237375437E071-11976
chr173737560637375656E071-11757
chr173737586637376009E071-11404
chr173737608337376453E071-10960
chr173738702837388961E0710
chr173739259037392687E0715177
chr173739426537395286E0716852
chr173734867037348738E072-38675
chr173734880437348947E072-38466
chr173734900237349052E072-38361
chr173735571037355764E072-31649
chr173735807437358143E072-29270
chr173735815937358329E072-29084
chr173735851037358565E072-28848
chr173735882437358905E072-28508
chr173735891837359013E072-28400
chr173736317937363846E072-23567
chr173736424237364302E072-23111
chr173736433837364548E072-22865
chr173736455137364755E072-22658
chr173736476537366392E072-21021
chr173736666137366794E072-20619
chr173736684037366890E072-20523
chr173736715637367287E072-20126
chr173736839137368441E072-18972
chr173736854037369402E072-18011
chr173734842437348489E073-38924
chr173734867037348738E073-38675
chr173734880437348947E073-38466
chr173734900237349052E073-38361
chr173735807437358143E073-29270
chr173735815937358329E073-29084
chr173735851037358565E073-28848
chr173735882437358905E073-28508
chr173735891837359013E073-28400
chr173735907737359147E073-28266
chr173735918337359234E073-28179
chr173736476537366392E073-21021
chr173736666137366794E073-20619
chr173736684037366890E073-20523
chr173736715637367287E073-20126
chr173737520237375437E073-11976
chr173737560637375656E073-11757
chr173737933637379502E073-7911
chr173737988737380112E073-7301
chr173738702837388961E0730
chr173739426537395286E0736852
chr173740023037401826E07312817
chr173735046737350585E074-36828
chr173735807437358143E074-29270
chr173735815937358329E074-29084
chr173735851037358565E074-28848
chr173739426537395286E0746852
chr173734924637349353E081-38060
chr173734949437349643E081-37770
chr173734970137349934E081-37479
chr173734996537350194E081-37219
chr173735029337350390E081-37023
chr173735046737350585E081-36828
chr173735571037355764E081-31649
chr173736455137364755E081-22658
chr173736476537366392E081-21021
chr173736666137366794E081-20619
chr173736684037366890E081-20523
chr173736854037369402E081-18011
chr173737520237375437E081-11976
chr173737560637375656E081-11757
chr173737586637376009E081-11404
chr173737608337376453E081-10960
chr173738702837388961E0810
chr173739181937392578E0814406
chr173739259037392687E0815177
chr173739278537393701E0815372
chr173734842437348489E082-38924
chr173734867037348738E082-38675
chr173734880437348947E082-38466
chr173734900237349052E082-38361
chr173734924637349353E082-38060
chr173736455137364755E082-22658
chr173736476537366392E082-21021
chr173736684037366890E082-20523
chr173738702837388961E0820
chr173739181937392578E0824406
chr173739259037392687E0825177
chr173739278537393701E0825372










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr173735585437357527E067-29886
chr173738067837381421E067-5992
chr173738159837382614E067-4799
chr173735585437357527E068-29886
chr173738067837381421E068-5992
chr173738159837382614E068-4799
chr173735585437357527E069-29886
chr173738067837381421E069-5992
chr173738159837382614E069-4799
chr173735585437357527E070-29886
chr173735585437357527E071-29886
chr173735585437357527E072-29886
chr173738067837381421E072-5992
chr173738159837382614E072-4799
chr173735585437357527E073-29886
chr173738067837381421E073-5992
chr173738159837382614E073-4799
chr173735585437357527E074-29886
chr173738159837382614E074-4799
chr173735585437357527E081-29886
chr173735585437357527E082-29886
chr173738159837382614E082-4799