SNP Detail Info-rs884895

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

LINC01376 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0258 (7737/29910,GnomAD)
A=0310 (9042/29116,TOPMED)
A=0294 (1472/5008,1000G)
A=0150 (577/3854,ALSPAC)
A=0151 (560/3708,TWINSUK)

Position: chr2:19003723 (GRCh38.p7) (2p24.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 6 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 2	NC_000002.12:g.19003723G>A
GRCh37.p13 chr 2	NC_000002.11:g.19184996G>A

Molecule type	Change	Amino acid[Codon]	SO Term
LINC01376 transcript	NR_135287.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.454	A=0.546
1000Genomes	American	Sub	694	G=0.840	A=0.160
1000Genomes	East Asian	Sub	1008	G=0.827	A=0.173
1000Genomes	Europe	Sub	1006	G=0.849	A=0.151
1000Genomes	Global	Study-wide	5008	G=0.706	A=0.294
1000Genomes	South Asian	Sub	978	G=0.680	A=0.320
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.850	A=0.150
The Genome Aggregation Database	African	Sub	8698	G=0.497	A=0.503
The Genome Aggregation Database	American	Sub	836	G=0.840	A=0.160
The Genome Aggregation Database	East Asian	Sub	1616	G=0.820	A=0.180
The Genome Aggregation Database	Europe	Sub	18458	G=0.843	A=0.156
The Genome Aggregation Database	Global	Study-wide	29910	G=0.741	A=0.258
The Genome Aggregation Database	Other	Sub	302	G=0.830	A=0.170
Trans-Omics for Precision Medicine	Global	Study-wide	29116	G=0.689	A=0.310
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.849	A=0.151

PMID	Title	Author	Journal
21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Heath AC	Biol Psychiatry

SNP ID	p-value	Traits	Study
rs884895	7.4E-05	alcoholism (heaviness of drinking)	21529783

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr2	19172383	19173429	E068	-11567
chr2	19172383	19173429	E070	-11567
chr2	19173624	19173688	E070	-11308
chr2	19172383	19173429	E073	-11567
chr2	19172383	19173429	E074	-11567
chr2	19172383	19173429	E081	-11567

rs884895