rs887942

Homo sapiens
G>C
None
Check p-value
SNV (Single Nucleotide Variation)
G==0312 (9331/29892,GnomAD)
G==0322 (9377/29116,TOPMED)
G==0357 (1787/5008,1000G)
G==0364 (1401/3854,ALSPAC)
G==0357 (1323/3708,TWINSUK)
chr2:59548033 (GRCh38.p7) (2p16.1)
AD
GWASdb2
1   publication(s)
See rs on genome
25 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.59548033G>C
GRCh37.p13 chr 2NC_000002.11:g.59775168G>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.266C=0.734
1000GenomesAmericanSub694G=0.370C=0.630
1000GenomesEast AsianSub1008G=0.488C=0.512
1000GenomesEuropeSub1006G=0.357C=0.643
1000GenomesGlobalStudy-wide5008G=0.357C=0.643
1000GenomesSouth AsianSub978G=0.340C=0.660
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.364C=0.636
The Genome Aggregation DatabaseAfricanSub8690G=0.274C=0.726
The Genome Aggregation DatabaseAmericanSub836G=0.360C=0.640
The Genome Aggregation DatabaseEast AsianSub1604G=0.497C=0.503
The Genome Aggregation DatabaseEuropeSub18462G=0.311C=0.689
The Genome Aggregation DatabaseGlobalStudy-wide29892G=0.312C=0.687
The Genome Aggregation DatabaseOtherSub300G=0.350C=0.650
Trans-Omics for Precision MedicineGlobalStudy-wide29116G=0.322C=0.677
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.357C=0.643
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs8879422.61E-05alcohol consumption23743675

eQTL of rs887942 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs887942 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr25981223659812346E07037068
chr25981267359813110E07037505
chr25981330659813694E07038138
chr25981267359813110E07137505
chr25981267359813110E07237505
chr25981267359813110E07437505
chr25979357059793733E08118402
chr25979377559794244E08118607
chr25979429459794429E08119126
chr25979448259795096E08119314
chr25979531859795414E08120150
chr25979556659795892E08120398
chr25979831859798751E08123150
chr25979946259799668E08124294
chr25981267359813110E08137505
chr25979357059793733E08218402
chr25979377559794244E08218607
chr25979429459794429E08219126
chr25979448259795096E08219314
chr25979531859795414E08220150
chr25981223659812346E08237068
chr25981267359813110E08237505
chr25981330659813694E08238138
chr25981540359815727E08240235
chr25981573359815897E08240565