rs893779

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0195 (5851/29952,GnomAD)
C=0137 (4008/29116,TOPMED)
C=0103 (517/5008,1000G)
C=0245 (946/3854,ALSPAC)
C=0253 (938/3708,TWINSUK)
chr2:64028052 (GRCh38.p7) (2p14)
AD
GWASdb2
1   publication(s)
See rs on genome
45 Enhancers around
19 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.64028052T>C
GRCh37.p13 chr 2NC_000002.11:g.64255186T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.986C=0.014
1000GenomesAmericanSub694T=0.800C=0.200
1000GenomesEast AsianSub1008T=0.925C=0.075
1000GenomesEuropeSub1006T=0.790C=0.210
1000GenomesGlobalStudy-wide5008T=0.897C=0.103
1000GenomesSouth AsianSub978T=0.930C=0.070
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.755C=0.245
The Genome Aggregation DatabaseAfricanSub8720T=0.954C=0.046
The Genome Aggregation DatabaseAmericanSub838T=0.820C=0.180
The Genome Aggregation DatabaseEast AsianSub1618T=0.927C=0.073
The Genome Aggregation DatabaseEuropeSub18474T=0.721C=0.278
The Genome Aggregation DatabaseGlobalStudy-wide29952T=0.804C=0.195
The Genome Aggregation DatabaseOtherSub302T=0.880C=0.120
Trans-Omics for Precision MedicineGlobalStudy-wide29116T=0.862C=0.137
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.747C=0.253
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs8937790.00097alcohol dependence20201924

eQTL of rs893779 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs893779 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr26424262864242803E067-12383
chr26424295664243073E067-12113
chr26424319064243254E067-11932
chr26424333264243382E067-11804
chr26429105164291618E06735865
chr26421289864212972E068-42214
chr26421379164213841E068-41345
chr26422903664229086E068-26100
chr26424262864242803E068-12383
chr26424295664243073E068-12113
chr26424319064243254E068-11932
chr26424333264243382E068-11804
chr26427671564277552E06821529
chr26429073764290887E06835551
chr26429105164291618E06835865
chr26429162264292199E06836436
chr26422139064221515E069-33671
chr26424262864242803E069-12383
chr26424319064243254E069-11932
chr26424333264243382E069-11804
chr26427671564277552E06921529
chr26427964964279890E06924463
chr26429105164291618E06935865
chr26429040864290643E07035222
chr26429073764290887E07035551
chr26429105164291618E07035865
chr26429162264292199E07036436
chr26421379164213841E071-41345
chr26427671564277552E07121529
chr26429073764290887E07135551
chr26429105164291618E07135865
chr26429162264292199E07136436
chr26423913064239570E072-15616
chr26424262864242803E072-12383
chr26424319064243254E072-11932
chr26424333264243382E072-11804
chr26422903664229086E073-26100
chr26427671564277552E07321529
chr26429105164291618E07335865
chr26421289864212972E074-42214
chr26421379164213841E074-41345
chr26422903664229086E074-26100
chr26424333264243382E074-11804
chr26429105164291618E07435865
chr26429162264292199E07436436








Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr26424476564244828E067-10358
chr26424497364247946E067-7240
chr26424476564244828E068-10358
chr26424497364247946E068-7240
chr26424476564244828E069-10358
chr26424497364247946E069-7240
chr26424476564244828E070-10358
chr26424497364247946E070-7240
chr26424476564244828E071-10358
chr26424497364247946E071-7240
chr26424476564244828E072-10358
chr26424497364247946E072-7240
chr26424476564244828E073-10358
chr26424497364247946E073-7240
chr26424497364247946E074-7240
chr26424476564244828E081-10358
chr26424497364247946E081-7240
chr26424476564244828E082-10358
chr26424497364247946E082-7240