rs910821

Homo sapiens
T>A
GALNT2 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0285 (8524/29846,GnomAD)
A=0310 (9042/29116,TOPMED)
A=0272 (1363/5008,1000G)
A=0297 (1145/3854,ALSPAC)
A=0285 (1056/3708,TWINSUK)
chr1:230096494 (GRCh38.p7) (1q42.13)
AD
GWASdb2
1   publication(s)
See rs on genome

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 1NC_000001.11:g.230096494T>A
GRCh37.p13 chr 1NC_000001.10:g.230232241T>A
GALNT2 RefSeqGeneNG_011854.2:g.43706T>A

Gene: GALNT2, polypeptide N-acetylgalactosaminyltransferase 2(plus strand)

Molecule type Change Amino acid[Codon] SO Term
GALNT2 transcript variant 2NM_001291866.1:c.N/AIntron Variant
GALNT2 transcript variant 1NM_004481.4:c.N/AIntron Variant
GALNT2 transcript variant 3NR_120373.1:n.N/AGenic Downstream Transcript Variant
GALNT2 transcript variant X1XM_017000963.1:c.N/AIntron Variant
GALNT2 transcript variant X3XM_017000965.1:c.N/AIntron Variant
GALNT2 transcript variant X2XM_017000964.1:c.N/AGenic Upstream Transcript Variant
GALNT2 transcript variant X4XM_017000966.1:c.N/AGenic Upstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.648A=0.352
1000GenomesAmericanSub694T=0.780A=0.220
1000GenomesEast AsianSub1008T=0.728A=0.272
1000GenomesEuropeSub1006T=0.739A=0.261
1000GenomesGlobalStudy-wide5008T=0.728A=0.272
1000GenomesSouth AsianSub978T=0.790A=0.210
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.703A=0.297
The Genome Aggregation DatabaseAfricanSub8686T=0.674A=0.326
The Genome Aggregation DatabaseAmericanSub836T=0.790A=0.210
The Genome Aggregation DatabaseEast AsianSub1614T=0.745A=0.255
The Genome Aggregation DatabaseEuropeSub18408T=0.726A=0.273
The Genome Aggregation DatabaseGlobalStudy-wide29846T=0.714A=0.285
The Genome Aggregation DatabaseOtherSub302T=0.760A=0.240
Trans-Omics for Precision MedicineGlobalStudy-wide29116T=0.689A=0.310
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.715A=0.285
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs9108210.000106alcohol consumption23743675

eQTL of rs910821 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs910821 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr1230205242230205367E067-26874
chr1230205623230205896E067-26345
chr1230207835230207885E067-24356
chr1230208117230208319E067-23922
chr1230208638230208707E067-23534
chr1230208726230208848E067-23393
chr1230208917230208977E067-23264
chr1230209178230209553E067-22688
chr1230209632230209814E067-22427
chr1230210111230210246E067-21995
chr1230215040230216846E067-15395
chr1230219733230221171E067-11070
chr1230222505230222555E067-9686
chr1230222565230222615E067-9626
chr1230238650230238786E0676409
chr1230238957230239034E0676716
chr1230239370230239686E0677129
chr1230239701230239859E0677460
chr1230239912230240025E0677671
chr1230240136230242131E0677895
chr1230242423230242500E06710182
chr1230242543230242593E06710302
chr1230246923230247094E06714682
chr1230247258230247368E06715017
chr1230247402230247560E06715161
chr1230247694230248493E06715453
chr1230248506230250331E06716265
chr1230251446230251597E06719205
chr1230251746230251796E06719505
chr1230256319230256482E06724078
chr1230256504230257063E06724263
chr1230257172230257273E06724931
chr1230260456230261070E06728215
chr1230261081230261236E06728840
chr1230263513230263750E06731272
chr1230263887230264054E06731646
chr1230266014230266117E06733773
chr1230266292230266354E06734051
chr1230273165230273281E06740924
chr1230273350230273469E06741109
chr1230275621230275756E06743380
chr1230276002230276148E06743761
chr1230276175230276506E06743934
chr1230276641230276999E06744400
chr1230277872230277932E06745631
chr1230278006230278067E06745765
chr1230278124230278174E06745883
chr1230278470230278726E06746229
chr1230278741230278873E06746500
chr1230279096230279356E06746855
chr1230279369230279618E06747128
chr1230279813230280066E06747572
chr1230280116230280180E06747875
chr1230280307230280427E06748066
chr1230280597230280835E06748356
chr1230280971230281078E06748730
chr1230281116230281203E06748875
chr1230281210230281593E06748969
chr1230281704230281965E06749463
chr1230281986230282142E06749745
chr1230205623230205896E068-26345
chr1230206314230206398E068-25843
chr1230206424230206478E068-25763
chr1230207163230207213E068-25028
chr1230207274230207415E068-24826
chr1230208638230208707E068-23534
chr1230208726230208848E068-23393
chr1230208917230208977E068-23264
chr1230209178230209553E068-22688
chr1230209632230209814E068-22427
chr1230210111230210246E068-21995
chr1230210564230210685E068-21556
chr1230210759230210821E068-21420
chr1230211343230211393E068-20848
chr1230212014230212098E068-20143
chr1230213366230213493E068-18748
chr1230213532230213703E068-18538
chr1230213714230213843E068-18398
chr1230215040230216846E068-15395
chr1230219733230221171E068-11070
chr1230222565230222615E068-9626
chr1230222669230223245E068-8996
chr1230237687230237822E0685446
chr1230237897230238048E0685656
chr1230239370230239686E0687129
chr1230239701230239859E0687460
chr1230239912230240025E0687671
chr1230240136230242131E0687895
chr1230246923230247094E06814682
chr1230247258230247368E06815017
chr1230247402230247560E06815161
chr1230252888230253244E06820647
chr1230253410230253460E06821169
chr1230253563230253729E06821322
chr1230256319230256482E06824078
chr1230256504230257063E06824263
chr1230257172230257273E06824931
chr1230260176230260263E06827935
chr1230260456230261070E06828215
chr1230261081230261236E06828840
chr1230261391230261673E06829150
chr1230261716230262029E06829475
chr1230262152230262238E06829911
chr1230262388230262438E06830147
chr1230263513230263750E06831272
chr1230263887230264054E06831646
chr1230273165230273281E06840924
chr1230273350230273469E06841109
chr1230275265230275336E06843024
chr1230275621230275756E06843380
chr1230276641230276999E06844400
chr1230278006230278067E06845765
chr1230278124230278174E06845883
chr1230278470230278726E06846229
chr1230278741230278873E06846500
chr1230279096230279356E06846855
chr1230279369230279618E06847128
chr1230279813230280066E06847572
chr1230280116230280180E06847875
chr1230280307230280427E06848066
chr1230280597230280835E06848356
chr1230280971230281078E06848730
chr1230281116230281203E06848875
chr1230281210230281593E06848969
chr1230281704230281965E06849463
chr1230281986230282142E06849745
chr1230205242230205367E069-26874
chr1230205623230205896E069-26345
chr1230208638230208707E069-23534
chr1230208726230208848E069-23393
chr1230208917230208977E069-23264
chr1230209178230209553E069-22688
chr1230209632230209814E069-22427
chr1230210111230210246E069-21995
chr1230219733230221171E069-11070
chr1230222131230222422E069-9819
chr1230222505230222555E069-9686
chr1230222565230222615E069-9626
chr1230239370230239686E0697129
chr1230239701230239859E0697460
chr1230239912230240025E0697671
chr1230240136230242131E0697895
chr1230242423230242500E06910182
chr1230242543230242593E06910302
chr1230246923230247094E06914682
chr1230247258230247368E06915017
chr1230247402230247560E06915161
chr1230247694230248493E06915453
chr1230251446230251597E06919205
chr1230251746230251796E06919505
chr1230253410230253460E06921169
chr1230253563230253729E06921322
chr1230256319230256482E06924078
chr1230256504230257063E06924263
chr1230260456230261070E06928215
chr1230261081230261236E06928840
chr1230263887230264054E06931646
chr1230264653230265021E06932412
chr1230266014230266117E06933773
chr1230266292230266354E06934051
chr1230272050230272154E06939809
chr1230273165230273281E06940924
chr1230273350230273469E06941109
chr1230275265230275336E06943024
chr1230275621230275756E06943380
chr1230276641230276999E06944400
chr1230277872230277932E06945631
chr1230278006230278067E06945765
chr1230278124230278174E06945883
chr1230278470230278726E06946229
chr1230278741230278873E06946500
chr1230279096230279356E06946855
chr1230279369230279618E06947128
chr1230279813230280066E06947572
chr1230280116230280180E06947875
chr1230280307230280427E06948066
chr1230280597230280835E06948356
chr1230280971230281078E06948730
chr1230281116230281203E06948875
chr1230281210230281593E06948969
chr1230281704230281965E06949463
chr1230281986230282142E06949745
chr1230205623230205896E070-26345
chr1230206314230206398E070-25843
chr1230208726230208848E070-23393
chr1230208917230208977E070-23264
chr1230209178230209553E070-22688
chr1230209632230209814E070-22427
chr1230210111230210246E070-21995
chr1230210564230210685E070-21556
chr1230214780230214885E070-17356
chr1230219733230221171E070-11070
chr1230221933230222023E070-10218
chr1230222131230222422E070-9819
chr1230222505230222555E070-9686
chr1230222565230222615E070-9626
chr1230222669230223245E070-8996
chr1230238957230239034E0706716
chr1230239370230239686E0707129
chr1230239701230239859E0707460
chr1230239912230240025E0707671
chr1230240136230242131E0707895
chr1230246923230247094E07014682
chr1230247258230247368E07015017
chr1230247402230247560E07015161
chr1230247694230248493E07015453
chr1230248506230250331E07016265
chr1230260456230261070E07028215
chr1230261081230261236E07028840
chr1230261391230261673E07029150
chr1230273350230273469E07041109
chr1230274554230274720E07042313
chr1230275265230275336E07043024
chr1230275621230275756E07043380
chr1230276002230276148E07043761
chr1230276175230276506E07043934
chr1230276641230276999E07044400
chr1230278006230278067E07045765
chr1230278124230278174E07045883
chr1230278470230278726E07046229
chr1230278741230278873E07046500
chr1230279096230279356E07046855
chr1230279369230279618E07047128
chr1230279813230280066E07047572
chr1230280116230280180E07047875
chr1230280307230280427E07048066
chr1230280597230280835E07048356
chr1230280971230281078E07048730
chr1230281116230281203E07048875
chr1230281210230281593E07048969
chr1230281704230281965E07049463
chr1230281986230282142E07049745
chr1230205242230205367E071-26874
chr1230205623230205896E071-26345
chr1230206314230206398E071-25843
chr1230206424230206478E071-25763
chr1230207163230207213E071-25028
chr1230207274230207415E071-24826
chr1230207516230207685E071-24556
chr1230207835230207885E071-24356
chr1230208117230208319E071-23922
chr1230208638230208707E071-23534
chr1230208726230208848E071-23393
chr1230208917230208977E071-23264
chr1230209178230209553E071-22688
chr1230209632230209814E071-22427
chr1230210111230210246E071-21995
chr1230210564230210685E071-21556
chr1230210759230210821E071-21420
chr1230211343230211393E071-20848
chr1230214780230214885E071-17356
chr1230219733230221171E071-11070
chr1230221933230222023E071-10218
chr1230222131230222422E071-9819
chr1230222505230222555E071-9686
chr1230222565230222615E071-9626
chr1230222669230223245E071-8996
chr1230232591230232646E071350
chr1230238957230239034E0716716
chr1230239370230239686E0717129
chr1230239701230239859E0717460
chr1230239912230240025E0717671
chr1230240136230242131E0717895
chr1230245618230246272E07113377
chr1230246923230247094E07114682
chr1230247258230247368E07115017
chr1230247402230247560E07115161
chr1230255819230255873E07123578
chr1230255897230256272E07123656
chr1230256319230256482E07124078
chr1230260176230260263E07127935
chr1230260456230261070E07128215
chr1230261081230261236E07128840
chr1230261391230261673E07129150
chr1230261716230262029E07129475
chr1230262152230262238E07129911
chr1230262388230262438E07130147
chr1230262712230263094E07130471
chr1230263513230263750E07131272
chr1230263887230264054E07131646
chr1230264653230265021E07132412
chr1230266014230266117E07133773
chr1230272050230272154E07139809
chr1230273350230273469E07141109
chr1230275265230275336E07143024
chr1230275621230275756E07143380
chr1230276002230276148E07143761
chr1230276175230276506E07143934
chr1230276641230276999E07144400
chr1230277872230277932E07145631
chr1230278006230278067E07145765
chr1230278124230278174E07145883
chr1230278470230278726E07146229
chr1230278741230278873E07146500
chr1230279813230280066E07147572
chr1230280116230280180E07147875
chr1230280307230280427E07148066
chr1230280597230280835E07148356
chr1230280971230281078E07148730
chr1230281116230281203E07148875
chr1230281210230281593E07148969
chr1230281704230281965E07149463
chr1230281986230282142E07149745
chr1230208117230208319E072-23922
chr1230208638230208707E072-23534
chr1230208726230208848E072-23393
chr1230208917230208977E072-23264
chr1230209178230209553E072-22688
chr1230209632230209814E072-22427
chr1230210111230210246E072-21995
chr1230210564230210685E072-21556
chr1230210759230210821E072-21420
chr1230213532230213703E072-18538
chr1230219733230221171E072-11070
chr1230222505230222555E072-9686
chr1230222565230222615E072-9626
chr1230222669230223245E072-8996
chr1230238957230239034E0726716
chr1230239370230239686E0727129
chr1230239701230239859E0727460
chr1230245618230246272E07213377
chr1230246923230247094E07214682
chr1230247258230247368E07215017
chr1230247402230247560E07215161
chr1230251446230251597E07219205
chr1230251746230251796E07219505
chr1230260176230260263E07227935
chr1230260456230261070E07228215
chr1230261081230261236E07228840
chr1230272050230272154E07239809
chr1230273165230273281E07240924
chr1230273350230273469E07241109
chr1230275265230275336E07243024
chr1230275621230275756E07243380
chr1230276002230276148E07243761
chr1230276175230276506E07243934
chr1230276641230276999E07244400
chr1230277108230277260E07244867
chr1230277872230277932E07245631
chr1230278006230278067E07245765
chr1230278124230278174E07245883
chr1230278470230278726E07246229
chr1230278741230278873E07246500
chr1230279096230279356E07246855
chr1230279369230279618E07247128
chr1230279813230280066E07247572
chr1230280116230280180E07247875
chr1230280307230280427E07248066
chr1230280597230280835E07248356
chr1230280971230281078E07248730
chr1230281116230281203E07248875
chr1230281210230281593E07248969
chr1230281704230281965E07249463
chr1230281986230282142E07249745
chr1230205242230205367E073-26874
chr1230205623230205896E073-26345
chr1230206314230206398E073-25843
chr1230207163230207213E073-25028
chr1230207274230207415E073-24826
chr1230207516230207685E073-24556
chr1230208638230208707E073-23534
chr1230208726230208848E073-23393
chr1230208917230208977E073-23264
chr1230209178230209553E073-22688
chr1230209632230209814E073-22427
chr1230210111230210246E073-21995
chr1230210564230210685E073-21556
chr1230210759230210821E073-21420
chr1230219733230221171E073-11070
chr1230222669230223245E073-8996
chr1230237687230237822E0735446
chr1230237897230238048E0735656
chr1230238957230239034E0736716
chr1230239370230239686E0737129
chr1230239701230239859E0737460
chr1230239912230240025E0737671
chr1230240136230242131E0737895
chr1230242423230242500E07310182
chr1230242543230242593E07310302
chr1230245618230246272E07313377
chr1230246923230247094E07314682
chr1230247258230247368E07315017
chr1230247402230247560E07315161
chr1230247694230248493E07315453
chr1230248506230250331E07316265
chr1230256319230256482E07324078
chr1230256504230257063E07324263
chr1230257172230257273E07324931
chr1230260456230261070E07328215
chr1230261081230261236E07328840
chr1230261391230261673E07329150
chr1230261716230262029E07329475
chr1230262152230262238E07329911
chr1230263887230264054E07331646
chr1230266292230266354E07334051
chr1230266413230266558E07334172
chr1230272050230272154E07339809
chr1230275265230275336E07343024
chr1230275621230275756E07343380
chr1230278006230278067E07345765
chr1230278124230278174E07345883
chr1230278470230278726E07346229
chr1230278741230278873E07346500
chr1230279096230279356E07346855
chr1230279369230279618E07347128
chr1230279813230280066E07347572
chr1230280116230280180E07347875
chr1230280307230280427E07348066
chr1230280597230280835E07348356
chr1230280971230281078E07348730
chr1230281116230281203E07348875
chr1230281210230281593E07348969
chr1230281704230281965E07349463
chr1230281986230282142E07349745
chr1230205242230205367E074-26874
chr1230205623230205896E074-26345
chr1230206314230206398E074-25843
chr1230206424230206478E074-25763
chr1230207163230207213E074-25028
chr1230207274230207415E074-24826
chr1230208638230208707E074-23534
chr1230208726230208848E074-23393
chr1230208917230208977E074-23264
chr1230209178230209553E074-22688
chr1230209632230209814E074-22427
chr1230210111230210246E074-21995
chr1230210564230210685E074-21556
chr1230210759230210821E074-21420
chr1230212575230212692E074-19549
chr1230212814230212897E074-19344
chr1230212905230213365E074-18876
chr1230213366230213493E074-18748
chr1230219733230221171E074-11070
chr1230221933230222023E074-10218
chr1230222131230222422E074-9819
chr1230222505230222555E074-9686
chr1230222565230222615E074-9626
chr1230239701230239859E0747460
chr1230239912230240025E0747671
chr1230240136230242131E0747895
chr1230243878230243934E07411637
chr1230245618230246272E07413377
chr1230246923230247094E07414682
chr1230247258230247368E07415017
chr1230247402230247560E07415161
chr1230247694230248493E07415453
chr1230255897230256272E07423656
chr1230256319230256482E07424078
chr1230256504230257063E07424263
chr1230260176230260263E07427935
chr1230260456230261070E07428215
chr1230261081230261236E07428840
chr1230261391230261673E07429150
chr1230261716230262029E07429475
chr1230262152230262238E07429911
chr1230262388230262438E07430147
chr1230263513230263750E07431272
chr1230263887230264054E07431646
chr1230272050230272154E07439809
chr1230272208230272708E07439967
chr1230273350230273469E07441109
chr1230275621230275756E07443380
chr1230276641230276999E07444400
chr1230277108230277260E07444867
chr1230277872230277932E07445631
chr1230278006230278067E07445765
chr1230278124230278174E07445883
chr1230278470230278726E07446229
chr1230278741230278873E07446500
chr1230279096230279356E07446855
chr1230279369230279618E07447128
chr1230279813230280066E07447572
chr1230280116230280180E07447875
chr1230280307230280427E07448066
chr1230280597230280835E07448356
chr1230280971230281078E07448730
chr1230281116230281203E07448875
chr1230281210230281593E07448969
chr1230281704230281965E07449463
chr1230281986230282142E07449745
chr1230205242230205367E081-26874
chr1230205623230205896E081-26345
chr1230208638230208707E081-23534
chr1230208726230208848E081-23393
chr1230208917230208977E081-23264
chr1230209178230209553E081-22688
chr1230209632230209814E081-22427
chr1230210111230210246E081-21995
chr1230210564230210685E081-21556
chr1230210759230210821E081-21420
chr1230219733230221171E081-11070
chr1230232591230232646E081350
chr1230234882230234932E0812641
chr1230236787230236887E0814546
chr1230237001230237062E0814760
chr1230237370230237414E0815129
chr1230238650230238786E0816409
chr1230238957230239034E0816716
chr1230239370230239686E0817129
chr1230239701230239859E0817460
chr1230239912230240025E0817671
chr1230240136230242131E0817895
chr1230242423230242500E08110182
chr1230242543230242593E08110302
chr1230242784230243065E08110543
chr1230246923230247094E08114682
chr1230247258230247368E08115017
chr1230247402230247560E08115161
chr1230247694230248493E08115453
chr1230257853230258019E08125612
chr1230258061230258847E08125820
chr1230259978230260175E08127737
chr1230260176230260263E08127935
chr1230260456230261070E08128215
chr1230261081230261236E08128840
chr1230261391230261673E08129150
chr1230261716230262029E08129475
chr1230262152230262238E08129911
chr1230262388230262438E08130147
chr1230262712230263094E08130471
chr1230263513230263750E08131272
chr1230263887230264054E08131646
chr1230264653230265021E08132412
chr1230266014230266117E08133773
chr1230266292230266354E08134051
chr1230266413230266558E08134172
chr1230272050230272154E08139809
chr1230272208230272708E08139967
chr1230272780230273084E08140539
chr1230273165230273281E08140924
chr1230273350230273469E08141109
chr1230275621230275756E08143380
chr1230276002230276148E08143761
chr1230276175230276506E08143934
chr1230276641230276999E08144400
chr1230277108230277260E08144867
chr1230277872230277932E08145631
chr1230278006230278067E08145765
chr1230278124230278174E08145883
chr1230278470230278726E08146229
chr1230278741230278873E08146500
chr1230279096230279356E08146855
chr1230279369230279618E08147128
chr1230280597230280835E08148356
chr1230280971230281078E08148730
chr1230281116230281203E08148875
chr1230281210230281593E08148969
chr1230211343230211393E082-20848
chr1230222669230223245E082-8996
chr1230238957230239034E0826716
chr1230239370230239686E0827129
chr1230239701230239859E0827460
chr1230239912230240025E0827671
chr1230246923230247094E08214682
chr1230247258230247368E08215017
chr1230247402230247560E08215161
chr1230247694230248493E08215453
chr1230257172230257273E08224931
chr1230257385230257439E08225144
chr1230257853230258019E08225612
chr1230258061230258847E08225820
chr1230258871230259489E08226630
chr1230260456230261070E08228215
chr1230261081230261236E08228840
chr1230263513230263750E08231272
chr1230263887230264054E08231646
chr1230264653230265021E08232412
chr1230272780230273084E08240539
chr1230273165230273281E08240924
chr1230273350230273469E08241109
chr1230277108230277260E08244867
chr1230277872230277932E08245631
chr1230278006230278067E08245765
chr1230278124230278174E08245883
chr1230278470230278726E08246229
chr1230278741230278873E08246500
chr1230279096230279356E08246855
chr1230279369230279618E08247128
chr1230279813230280066E08247572
chr1230280116230280180E08247875
chr1230281210230281593E08248969
chr1230281704230281965E08249463
chr1230281986230282142E08249745










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr1230202170230204968E067-27273
chr1230202170230204968E068-27273
chr1230202170230204968E069-27273
chr1230202170230204968E070-27273
chr1230202170230204968E071-27273
chr1230202170230204968E072-27273
chr1230202170230204968E073-27273
chr1230202170230204968E074-27273
chr1230202170230204968E081-27273
chr1230202170230204968E082-27273