rs919113

Homo sapiens
A>G
ITGA9 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G=0380 (11353/29854,GnomAD)
G=0356 (10388/29118,TOPMED)
G=0372 (1863/5008,1000G)
G=0416 (1602/3854,ALSPAC)
G=0427 (1582/3708,TWINSUK)
chr3:37558979 (GRCh38.p7) (3p22.2)
ND
GWASdb2
1   publication(s)
See rs on genome
53 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.37558979A>G
GRCh37.p13 chr 3NC_000003.11:g.37600470A>G
ITGA9 RefSeqGeneNG_016166.1:g.111658A>G

Gene: ITGA9, integrin subunit alpha 9(plus strand)

Molecule type Change Amino acid[Codon] SO Term
ITGA9 transcriptNM_002207.2:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.738G=0.262
1000GenomesAmericanSub694A=0.490G=0.510
1000GenomesEast AsianSub1008A=0.480G=0.520
1000GenomesEuropeSub1006A=0.585G=0.415
1000GenomesGlobalStudy-wide5008A=0.628G=0.372
1000GenomesSouth AsianSub978A=0.770G=0.230
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.584G=0.416
The Genome Aggregation DatabaseAfricanSub8700A=0.711G=0.289
The Genome Aggregation DatabaseAmericanSub836A=0.450G=0.550
The Genome Aggregation DatabaseEast AsianSub1600A=0.496G=0.504
The Genome Aggregation DatabaseEuropeSub18416A=0.594G=0.405
The Genome Aggregation DatabaseGlobalStudy-wide29854A=0.619G=0.380
The Genome Aggregation DatabaseOtherSub302A=0.620G=0.380
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.643G=0.356
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.573G=0.427
PMID Title Author Journal
19268276Genome-wide association study of smoking initiation and current smoking.Vink JMAm J Hum Genet

P-Value

SNP ID p-value Traits Study
rs9191130.000495nicotine smoking19268276

eQTL of rs919113 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs919113 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr33756220437563160E068-37310
chr33761236137612762E06811891
chr33755277737552890E069-47580
chr33755294737553397E069-47073
chr33758846937588667E069-11803
chr33756220437563160E070-37310
chr33755277737552890E071-47580
chr33755294737553397E071-47073
chr33756220437563160E071-37310
chr33763224137632326E07131771
chr33763236137633330E07131891
chr33763180737632027E07331337
chr33763224137632326E07331771
chr33763236137633330E07331891
chr33755277737552890E074-47580
chr33755294737553397E074-47073
chr33756220437563160E074-37310
chr33756318937563241E074-37229
chr33758846937588667E074-11803
chr33755234437552627E081-47843
chr33755277737552890E081-47580
chr33755294737553397E081-47073
chr33757728937577481E081-22989
chr33757762837577837E081-22633
chr33757795637578006E081-22464
chr33757805237578117E081-22353
chr33757837737578656E081-21814
chr33757880137578892E081-21578
chr33757910837579247E081-21223
chr33757950937580261E081-20209
chr33758641837586634E081-13836
chr33758666837586796E081-13674
chr33758681337586971E081-13499
chr33758703337587288E081-13182
chr33758737237587422E081-13048
chr33759936237599420E081-1050
chr33760009637600146E081-324
chr33760424337604334E0813773
chr33760449637604616E0814026
chr33760478737604867E0814317
chr33760491637605007E0814446
chr33757837737578656E082-21814
chr33757880137578892E082-21578
chr33757910837579247E082-21223
chr33757950937580261E082-20209
chr33758641837586634E082-13836
chr33758666837586796E082-13674
chr33758681337586971E082-13499
chr33758703337587288E082-13182
chr33760424337604334E0823773
chr33760449637604616E0824026
chr33760478737604867E0824317
chr33760491637605007E0824446