Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 10 | NC_000010.11:g.78455530C>A |
GRCh38.p7 chr 10 | NC_000010.11:g.78455530C>G |
GRCh37.p13 chr 10 | NC_000010.10:g.80215287C>A |
GRCh37.p13 chr 10 | NC_000010.10:g.80215287C>G |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
LOC107984245 transcript | XR_001747513.1:n. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.434 | G=0.566 |
1000Genomes | American | Sub | 694 | C=0.590 | G=0.410 |
1000Genomes | East Asian | Sub | 1008 | C=0.419 | G=0.581 |
1000Genomes | Europe | Sub | 1006 | C=0.640 | G=0.360 |
1000Genomes | Global | Study-wide | 5008 | C=0.503 | G=0.497 |
1000Genomes | South Asian | Sub | 978 | C=0.480 | G=0.520 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.663 | G=0.337 |
The Genome Aggregation Database | African | Sub | 8698 | C=0.489 | A=0.000 |
The Genome Aggregation Database | American | Sub | 836 | C=0.640 | A=0.00, |
The Genome Aggregation Database | East Asian | Sub | 1618 | C=0.419 | A=0.000 |
The Genome Aggregation Database | Europe | Sub | 18446 | C=0.660 | A=0.000 |
The Genome Aggregation Database | Global | Study-wide | 29900 | C=0.596 | A=0.000 |
The Genome Aggregation Database | Other | Sub | 302 | C=0.610 | A=0.00, |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.572 | G=0.427 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.658 | G=0.342 |
PMID | Title | Author | Journal |
---|---|---|---|
17158188 | Novel genes identified in a high-density genome wide association study for nicotine dependence. | Bierut LJ | Hum Mol Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs919888 | 0.000217 | nicotine dependence | 17158188 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr10 | 35497486 | 35497987 | E067 | -24050 |
chr10 | 35498838 | 35499075 | E067 | -22962 |
chr10 | 35499128 | 35499324 | E067 | -22713 |
chr10 | 35499612 | 35499679 | E067 | -22358 |
chr10 | 35499868 | 35500094 | E067 | -21943 |
chr10 | 35500116 | 35500732 | E067 | -21305 |
chr10 | 35505117 | 35505891 | E067 | -16146 |
chr10 | 35505907 | 35505974 | E067 | -16063 |
chr10 | 35506134 | 35506196 | E067 | -15841 |
chr10 | 35506283 | 35506741 | E067 | -15296 |
chr10 | 35507065 | 35507919 | E067 | -14118 |
chr10 | 35480406 | 35480825 | E068 | -41212 |
chr10 | 35480841 | 35480979 | E068 | -41058 |
chr10 | 35481007 | 35481068 | E068 | -40969 |
chr10 | 35481088 | 35481205 | E068 | -40832 |
chr10 | 35497486 | 35497987 | E068 | -24050 |
chr10 | 35498206 | 35498449 | E068 | -23588 |
chr10 | 35498536 | 35498576 | E068 | -23461 |
chr10 | 35498838 | 35499075 | E068 | -22962 |
chr10 | 35499128 | 35499324 | E068 | -22713 |
chr10 | 35499612 | 35499679 | E068 | -22358 |
chr10 | 35504982 | 35505036 | E068 | -17001 |
chr10 | 35505117 | 35505891 | E068 | -16146 |
chr10 | 35505907 | 35505974 | E068 | -16063 |
chr10 | 35506134 | 35506196 | E068 | -15841 |
chr10 | 35506283 | 35506741 | E068 | -15296 |
chr10 | 35506843 | 35506965 | E068 | -15072 |
chr10 | 35507065 | 35507919 | E068 | -14118 |
chr10 | 35497486 | 35497987 | E069 | -24050 |
chr10 | 35498206 | 35498449 | E069 | -23588 |
chr10 | 35498536 | 35498576 | E069 | -23461 |
chr10 | 35498838 | 35499075 | E069 | -22962 |
chr10 | 35499128 | 35499324 | E069 | -22713 |
chr10 | 35499612 | 35499679 | E069 | -22358 |
chr10 | 35504982 | 35505036 | E069 | -17001 |
chr10 | 35505117 | 35505891 | E069 | -16146 |
chr10 | 35505907 | 35505974 | E069 | -16063 |
chr10 | 35506134 | 35506196 | E069 | -15841 |
chr10 | 35506283 | 35506741 | E069 | -15296 |
chr10 | 35506843 | 35506965 | E069 | -15072 |
chr10 | 35507065 | 35507919 | E069 | -14118 |
chr10 | 35521531 | 35521678 | E069 | -359 |
chr10 | 35521689 | 35521900 | E069 | -137 |
chr10 | 35505907 | 35505974 | E070 | -16063 |
chr10 | 35480406 | 35480825 | E071 | -41212 |
chr10 | 35480841 | 35480979 | E071 | -41058 |
chr10 | 35481007 | 35481068 | E071 | -40969 |
chr10 | 35481088 | 35481205 | E071 | -40832 |
chr10 | 35497486 | 35497987 | E071 | -24050 |
chr10 | 35498206 | 35498449 | E071 | -23588 |
chr10 | 35498536 | 35498576 | E071 | -23461 |
chr10 | 35498838 | 35499075 | E071 | -22962 |
chr10 | 35499128 | 35499324 | E071 | -22713 |
chr10 | 35499612 | 35499679 | E071 | -22358 |
chr10 | 35500116 | 35500732 | E071 | -21305 |
chr10 | 35505117 | 35505891 | E071 | -16146 |
chr10 | 35505907 | 35505974 | E071 | -16063 |
chr10 | 35506134 | 35506196 | E071 | -15841 |
chr10 | 35507065 | 35507919 | E071 | -14118 |
chr10 | 35507939 | 35507989 | E071 | -14048 |
chr10 | 35541596 | 35541698 | E071 | 19559 |
chr10 | 35480841 | 35480979 | E072 | -41058 |
chr10 | 35481007 | 35481068 | E072 | -40969 |
chr10 | 35481088 | 35481205 | E072 | -40832 |
chr10 | 35498206 | 35498449 | E072 | -23588 |
chr10 | 35498536 | 35498576 | E072 | -23461 |
chr10 | 35499612 | 35499679 | E072 | -22358 |
chr10 | 35505117 | 35505891 | E072 | -16146 |
chr10 | 35505907 | 35505974 | E072 | -16063 |
chr10 | 35506134 | 35506196 | E072 | -15841 |
chr10 | 35506283 | 35506741 | E072 | -15296 |
chr10 | 35506843 | 35506965 | E072 | -15072 |
chr10 | 35507065 | 35507919 | E072 | -14118 |
chr10 | 35521531 | 35521678 | E072 | -359 |
chr10 | 35521689 | 35521900 | E072 | -137 |
chr10 | 35480406 | 35480825 | E073 | -41212 |
chr10 | 35480841 | 35480979 | E073 | -41058 |
chr10 | 35481007 | 35481068 | E073 | -40969 |
chr10 | 35481088 | 35481205 | E073 | -40832 |
chr10 | 35481464 | 35481514 | E073 | -40523 |
chr10 | 35497486 | 35497987 | E073 | -24050 |
chr10 | 35498206 | 35498449 | E073 | -23588 |
chr10 | 35499868 | 35500094 | E073 | -21943 |
chr10 | 35502783 | 35502937 | E073 | -19100 |
chr10 | 35502982 | 35503032 | E073 | -19005 |
chr10 | 35503116 | 35503192 | E073 | -18845 |
chr10 | 35503390 | 35503783 | E073 | -18254 |
chr10 | 35505117 | 35505891 | E073 | -16146 |
chr10 | 35506283 | 35506741 | E073 | -15296 |
chr10 | 35506843 | 35506965 | E073 | -15072 |
chr10 | 35507065 | 35507919 | E073 | -14118 |
chr10 | 35497486 | 35497987 | E074 | -24050 |
chr10 | 35498206 | 35498449 | E074 | -23588 |
chr10 | 35498536 | 35498576 | E074 | -23461 |
chr10 | 35498838 | 35499075 | E074 | -22962 |
chr10 | 35499128 | 35499324 | E074 | -22713 |
chr10 | 35499612 | 35499679 | E074 | -22358 |
chr10 | 35499868 | 35500094 | E074 | -21943 |
chr10 | 35500116 | 35500732 | E074 | -21305 |
chr10 | 35505117 | 35505891 | E074 | -16146 |
chr10 | 35505907 | 35505974 | E074 | -16063 |
chr10 | 35506134 | 35506196 | E074 | -15841 |
chr10 | 35506283 | 35506741 | E074 | -15296 |
chr10 | 35506843 | 35506965 | E074 | -15072 |
chr10 | 35507065 | 35507919 | E074 | -14118 |
chr10 | 35492753 | 35493137 | E081 | -28900 |
chr10 | 35493441 | 35493518 | E081 | -28519 |
chr10 | 35501453 | 35501598 | E081 | -20439 |
chr10 | 35502687 | 35502739 | E081 | -19298 |
chr10 | 35502783 | 35502937 | E081 | -19100 |
chr10 | 35502982 | 35503032 | E081 | -19005 |
chr10 | 35503116 | 35503192 | E081 | -18845 |
chr10 | 35503390 | 35503783 | E081 | -18254 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr10 | 35483831 | 35485796 | E067 | -36241 |
chr10 | 35483831 | 35485796 | E068 | -36241 |
chr10 | 35483831 | 35485796 | E069 | -36241 |
chr10 | 35483831 | 35485796 | E070 | -36241 |
chr10 | 35483831 | 35485796 | E071 | -36241 |
chr10 | 35483831 | 35485796 | E072 | -36241 |
chr10 | 35483831 | 35485796 | E073 | -36241 |
chr10 | 35483831 | 35485796 | E074 | -36241 |
chr10 | 35483831 | 35485796 | E081 | -36241 |
chr10 | 35483831 | 35485796 | E082 | -36241 |