Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 3 | NC_000003.12:g.72647860G>A |
GRCh37.p13 chr 3 | NC_000003.11:g.72697011G>A |
GRCh38.p7 chr 3 fix patch HG126_PATCH | NW_011332691.1:g.322769G>A |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
LOC105377161 transcript | XR_940962.2:n. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.325 | A=0.675 |
1000Genomes | American | Sub | 694 | G=0.120 | A=0.880 |
1000Genomes | East Asian | Sub | 1008 | G=0.250 | A=0.750 |
1000Genomes | Europe | Sub | 1006 | G=0.087 | A=0.913 |
1000Genomes | Global | Study-wide | 5008 | G=0.191 | A=0.809 |
1000Genomes | South Asian | Sub | 978 | G=0.110 | A=0.890 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.077 | A=0.923 |
The Genome Aggregation Database | African | Sub | 8714 | G=0.280 | A=0.720 |
The Genome Aggregation Database | American | Sub | 838 | G=0.100 | A=0.900 |
The Genome Aggregation Database | East Asian | Sub | 1616 | G=0.225 | A=0.775 |
The Genome Aggregation Database | Europe | Sub | 18496 | G=0.070 | A=0.929 |
The Genome Aggregation Database | Global | Study-wide | 29966 | G=0.141 | A=0.858 |
The Genome Aggregation Database | Other | Sub | 302 | G=0.180 | A=0.820 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.184 | A=0.815 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.072 | A=0.928 |
PMID | Title | Author | Journal |
---|---|---|---|
24277619 | ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample. | Quillen EE | Am J Med Genet B Neuropsychiatr Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs923572 | 8.5E-05 | alcohol consumption (maxi-drinks) | 24277619 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr3 | 72653630 | 72653911 | E067 | -43100 |
chr3 | 72704948 | 72705037 | E067 | 7937 |
chr3 | 72705080 | 72705197 | E067 | 8069 |
chr3 | 72706702 | 72707247 | E067 | 9691 |
chr3 | 72712579 | 72712919 | E067 | 15568 |
chr3 | 72713884 | 72714048 | E067 | 16873 |
chr3 | 72728938 | 72729353 | E067 | 31927 |
chr3 | 72729466 | 72729553 | E067 | 32455 |
chr3 | 72732217 | 72732331 | E067 | 35206 |
chr3 | 72653034 | 72653199 | E068 | -43812 |
chr3 | 72653497 | 72653579 | E068 | -43432 |
chr3 | 72653630 | 72653911 | E068 | -43100 |
chr3 | 72704948 | 72705037 | E068 | 7937 |
chr3 | 72705080 | 72705197 | E068 | 8069 |
chr3 | 72706702 | 72707247 | E068 | 9691 |
chr3 | 72710021 | 72710635 | E068 | 13010 |
chr3 | 72710668 | 72710718 | E068 | 13657 |
chr3 | 72712579 | 72712919 | E068 | 15568 |
chr3 | 72713884 | 72714048 | E068 | 16873 |
chr3 | 72728938 | 72729353 | E068 | 31927 |
chr3 | 72650105 | 72650229 | E069 | -46782 |
chr3 | 72650327 | 72650569 | E069 | -46442 |
chr3 | 72653034 | 72653199 | E069 | -43812 |
chr3 | 72653497 | 72653579 | E069 | -43432 |
chr3 | 72653630 | 72653911 | E069 | -43100 |
chr3 | 72655488 | 72655855 | E069 | -41156 |
chr3 | 72666883 | 72667081 | E069 | -29930 |
chr3 | 72704948 | 72705037 | E069 | 7937 |
chr3 | 72705080 | 72705197 | E069 | 8069 |
chr3 | 72706702 | 72707247 | E069 | 9691 |
chr3 | 72710021 | 72710635 | E069 | 13010 |
chr3 | 72710668 | 72710718 | E069 | 13657 |
chr3 | 72712579 | 72712919 | E069 | 15568 |
chr3 | 72713884 | 72714048 | E069 | 16873 |
chr3 | 72728938 | 72729353 | E069 | 31927 |
chr3 | 72729466 | 72729553 | E069 | 32455 |
chr3 | 72650105 | 72650229 | E070 | -46782 |
chr3 | 72650327 | 72650569 | E070 | -46442 |
chr3 | 72704948 | 72705037 | E070 | 7937 |
chr3 | 72705080 | 72705197 | E070 | 8069 |
chr3 | 72650105 | 72650229 | E071 | -46782 |
chr3 | 72650327 | 72650569 | E071 | -46442 |
chr3 | 72655488 | 72655855 | E071 | -41156 |
chr3 | 72704948 | 72705037 | E071 | 7937 |
chr3 | 72705080 | 72705197 | E071 | 8069 |
chr3 | 72706702 | 72707247 | E071 | 9691 |
chr3 | 72710021 | 72710635 | E071 | 13010 |
chr3 | 72710668 | 72710718 | E071 | 13657 |
chr3 | 72712579 | 72712919 | E071 | 15568 |
chr3 | 72713884 | 72714048 | E071 | 16873 |
chr3 | 72728105 | 72728302 | E071 | 31094 |
chr3 | 72728408 | 72728550 | E071 | 31397 |
chr3 | 72728938 | 72729353 | E071 | 31927 |
chr3 | 72729466 | 72729553 | E071 | 32455 |
chr3 | 72650105 | 72650229 | E072 | -46782 |
chr3 | 72650327 | 72650569 | E072 | -46442 |
chr3 | 72653034 | 72653199 | E072 | -43812 |
chr3 | 72655488 | 72655855 | E072 | -41156 |
chr3 | 72704948 | 72705037 | E072 | 7937 |
chr3 | 72709577 | 72709708 | E072 | 12566 |
chr3 | 72710021 | 72710635 | E072 | 13010 |
chr3 | 72710668 | 72710718 | E072 | 13657 |
chr3 | 72713884 | 72714048 | E072 | 16873 |
chr3 | 72727813 | 72728045 | E072 | 30802 |
chr3 | 72728105 | 72728302 | E072 | 31094 |
chr3 | 72728408 | 72728550 | E072 | 31397 |
chr3 | 72728938 | 72729353 | E072 | 31927 |
chr3 | 72729466 | 72729553 | E072 | 32455 |
chr3 | 72728408 | 72728550 | E073 | 31397 |
chr3 | 72728938 | 72729353 | E073 | 31927 |
chr3 | 72729466 | 72729553 | E073 | 32455 |
chr3 | 72650105 | 72650229 | E074 | -46782 |
chr3 | 72650327 | 72650569 | E074 | -46442 |
chr3 | 72655488 | 72655855 | E074 | -41156 |
chr3 | 72666528 | 72666825 | E074 | -30186 |
chr3 | 72704948 | 72705037 | E074 | 7937 |
chr3 | 72705080 | 72705197 | E074 | 8069 |
chr3 | 72706702 | 72707247 | E074 | 9691 |
chr3 | 72710021 | 72710635 | E074 | 13010 |
chr3 | 72710668 | 72710718 | E074 | 13657 |
chr3 | 72712579 | 72712919 | E074 | 15568 |
chr3 | 72713884 | 72714048 | E074 | 16873 |
chr3 | 72714865 | 72715229 | E074 | 17854 |
chr3 | 72727813 | 72728045 | E074 | 30802 |
chr3 | 72728105 | 72728302 | E074 | 31094 |
chr3 | 72728408 | 72728550 | E074 | 31397 |
chr3 | 72728938 | 72729353 | E074 | 31927 |
chr3 | 72729466 | 72729553 | E074 | 32455 |
chr3 | 72650105 | 72650229 | E081 | -46782 |
chr3 | 72650327 | 72650569 | E081 | -46442 |
chr3 | 72653630 | 72653911 | E081 | -43100 |
chr3 | 72687767 | 72687830 | E081 | -9181 |
chr3 | 72704948 | 72705037 | E081 | 7937 |
chr3 | 72705080 | 72705197 | E081 | 8069 |
chr3 | 72714865 | 72715229 | E081 | 17854 |
chr3 | 72708868 | 72709152 | E082 | 11857 |
chr3 | 72729466 | 72729553 | E082 | 32455 |