rs9285980

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
T==0098 (2968/29996,GnomAD)
T==0101 (2958/29118,TOPMED)
T==0097 (486/5008,1000G)
T==0079 (304/3854,ALSPAC)
T==0082 (303/3708,TWINSUK)
chr10:125225933 (GRCh38.p7) (10q26.13)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.125225933T>C
GRCh37.p13 chr 10NC_000010.10:g.126914502T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.121C=0.879
1000GenomesAmericanSub694T=0.080C=0.920
1000GenomesEast AsianSub1008T=0.045C=0.955
1000GenomesEuropeSub1006T=0.096C=0.904
1000GenomesGlobalStudy-wide5008T=0.097C=0.903
1000GenomesSouth AsianSub978T=0.130C=0.870
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.079C=0.921
The Genome Aggregation DatabaseAfricanSub8730T=0.112C=0.888
The Genome Aggregation DatabaseAmericanSub838T=0.070C=0.930
The Genome Aggregation DatabaseEast AsianSub1622T=0.033C=0.967
The Genome Aggregation DatabaseEuropeSub18504T=0.100C=0.899
The Genome Aggregation DatabaseGlobalStudy-wide29996T=0.098C=0.901
The Genome Aggregation DatabaseOtherSub302T=0.050C=0.950
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.101C=0.898
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.082C=0.918
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs92859800.00093alcohol dependence20201924

eQTL of rs9285980 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9285980 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr10126898019126898548E067-15954
chr10126898634126898847E067-15655
chr10126902113126902613E067-11889
chr10126898019126898548E068-15954
chr10126898634126898847E068-15655
chr10126899285126899353E068-15149
chr10126902113126902613E068-11889
chr10126902679126902885E068-11617
chr10126902897126903104E068-11398
chr10126898019126898548E069-15954
chr10126898634126898847E069-15655
chr10126902113126902613E069-11889
chr10126902679126902885E069-11617
chr10126902897126903104E069-11398
chr10126898634126898847E070-15655
chr10126905191126905241E070-9261
chr10126905490126905914E070-8588
chr10126914715126914787E070213
chr10126921327126921407E0706825
chr10126921515126921698E0707013
chr10126897505126897628E071-16874
chr10126897684126897833E071-16669
chr10126897910126897979E071-16523
chr10126898019126898548E071-15954
chr10126898634126898847E071-15655
chr10126899285126899353E071-15149
chr10126902113126902613E071-11889
chr10126902679126902885E071-11617
chr10126902897126903104E071-11398
chr10126898019126898548E072-15954
chr10126898634126898847E072-15655
chr10126898019126898548E073-15954
chr10126898634126898847E073-15655
chr10126897684126897833E074-16669
chr10126897910126897979E074-16523
chr10126898019126898548E074-15954
chr10126898634126898847E074-15655
chr10126902113126902613E074-11889
chr10126902679126902885E074-11617
chr10126905016126905066E081-9436
chr10126905191126905241E081-9261
chr10126959339126959383E08144837
chr10126962029126962113E08147527
chr10126950568126950618E08236066
chr10126950740126950904E08236238
chr10126950905126950945E08236403
chr10126951097126951334E08236595
chr10126951474126951528E08236972
chr10126951543126951593E08237041
chr10126951649126951812E08237147