Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 10 | NC_000010.11:g.125225933T>C |
GRCh37.p13 chr 10 | NC_000010.10:g.126914502T>C |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | T=0.121 | C=0.879 |
1000Genomes | American | Sub | 694 | T=0.080 | C=0.920 |
1000Genomes | East Asian | Sub | 1008 | T=0.045 | C=0.955 |
1000Genomes | Europe | Sub | 1006 | T=0.096 | C=0.904 |
1000Genomes | Global | Study-wide | 5008 | T=0.097 | C=0.903 |
1000Genomes | South Asian | Sub | 978 | T=0.130 | C=0.870 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | T=0.079 | C=0.921 |
The Genome Aggregation Database | African | Sub | 8730 | T=0.112 | C=0.888 |
The Genome Aggregation Database | American | Sub | 838 | T=0.070 | C=0.930 |
The Genome Aggregation Database | East Asian | Sub | 1622 | T=0.033 | C=0.967 |
The Genome Aggregation Database | Europe | Sub | 18504 | T=0.100 | C=0.899 |
The Genome Aggregation Database | Global | Study-wide | 29996 | T=0.098 | C=0.901 |
The Genome Aggregation Database | Other | Sub | 302 | T=0.050 | C=0.950 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | T=0.101 | C=0.898 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | T=0.082 | C=0.918 |
PMID | Title | Author | Journal |
---|---|---|---|
20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs9285980 | 0.00093 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr10 | 126898019 | 126898548 | E067 | -15954 |
chr10 | 126898634 | 126898847 | E067 | -15655 |
chr10 | 126902113 | 126902613 | E067 | -11889 |
chr10 | 126898019 | 126898548 | E068 | -15954 |
chr10 | 126898634 | 126898847 | E068 | -15655 |
chr10 | 126899285 | 126899353 | E068 | -15149 |
chr10 | 126902113 | 126902613 | E068 | -11889 |
chr10 | 126902679 | 126902885 | E068 | -11617 |
chr10 | 126902897 | 126903104 | E068 | -11398 |
chr10 | 126898019 | 126898548 | E069 | -15954 |
chr10 | 126898634 | 126898847 | E069 | -15655 |
chr10 | 126902113 | 126902613 | E069 | -11889 |
chr10 | 126902679 | 126902885 | E069 | -11617 |
chr10 | 126902897 | 126903104 | E069 | -11398 |
chr10 | 126898634 | 126898847 | E070 | -15655 |
chr10 | 126905191 | 126905241 | E070 | -9261 |
chr10 | 126905490 | 126905914 | E070 | -8588 |
chr10 | 126914715 | 126914787 | E070 | 213 |
chr10 | 126921327 | 126921407 | E070 | 6825 |
chr10 | 126921515 | 126921698 | E070 | 7013 |
chr10 | 126897505 | 126897628 | E071 | -16874 |
chr10 | 126897684 | 126897833 | E071 | -16669 |
chr10 | 126897910 | 126897979 | E071 | -16523 |
chr10 | 126898019 | 126898548 | E071 | -15954 |
chr10 | 126898634 | 126898847 | E071 | -15655 |
chr10 | 126899285 | 126899353 | E071 | -15149 |
chr10 | 126902113 | 126902613 | E071 | -11889 |
chr10 | 126902679 | 126902885 | E071 | -11617 |
chr10 | 126902897 | 126903104 | E071 | -11398 |
chr10 | 126898019 | 126898548 | E072 | -15954 |
chr10 | 126898634 | 126898847 | E072 | -15655 |
chr10 | 126898019 | 126898548 | E073 | -15954 |
chr10 | 126898634 | 126898847 | E073 | -15655 |
chr10 | 126897684 | 126897833 | E074 | -16669 |
chr10 | 126897910 | 126897979 | E074 | -16523 |
chr10 | 126898019 | 126898548 | E074 | -15954 |
chr10 | 126898634 | 126898847 | E074 | -15655 |
chr10 | 126902113 | 126902613 | E074 | -11889 |
chr10 | 126902679 | 126902885 | E074 | -11617 |
chr10 | 126905016 | 126905066 | E081 | -9436 |
chr10 | 126905191 | 126905241 | E081 | -9261 |
chr10 | 126959339 | 126959383 | E081 | 44837 |
chr10 | 126962029 | 126962113 | E081 | 47527 |
chr10 | 126950568 | 126950618 | E082 | 36066 |
chr10 | 126950740 | 126950904 | E082 | 36238 |
chr10 | 126950905 | 126950945 | E082 | 36403 |
chr10 | 126951097 | 126951334 | E082 | 36595 |
chr10 | 126951474 | 126951528 | E082 | 36972 |
chr10 | 126951543 | 126951593 | E082 | 37041 |
chr10 | 126951649 | 126951812 | E082 | 37147 |