SNP Detail Info-rs9291662

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0342 (10254/29952,GnomAD)
A=0415 (12102/29118,TOPMED)
A=0416 (2083/5008,1000G)
A=0214 (823/3854,ALSPAC)
A=0223 (827/3708,TWINSUK)

Position: chr4:18077894 (GRCh38.p7) (4p15.31)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 4	NC_000004.12:g.18077894G>A
GRCh37.p13 chr 4	NC_000004.11:g.18079517G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.321	A=0.679
1000Genomes	American	Sub	694	G=0.630	A=0.370
1000Genomes	East Asian	Sub	1008	G=0.498	A=0.502
1000Genomes	Europe	Sub	1006	G=0.780	A=0.220
1000Genomes	Global	Study-wide	5008	G=0.584	A=0.416
1000Genomes	South Asian	Sub	978	G=0.790	A=0.210
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.786	A=0.214
The Genome Aggregation Database	African	Sub	8714	G=0.379	A=0.621
The Genome Aggregation Database	American	Sub	838	G=0.650	A=0.350
The Genome Aggregation Database	East Asian	Sub	1620	G=0.475	A=0.525
The Genome Aggregation Database	Europe	Sub	18478	G=0.803	A=0.196
The Genome Aggregation Database	Global	Study-wide	29952	G=0.657	A=0.342
The Genome Aggregation Database	Other	Sub	302	G=0.790	A=0.210
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.584	A=0.415
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.777	A=0.223

PMID	Title	Author	Journal
21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Heath AC	Biol Psychiatry

SNP ID	p-value	Traits	Study
rs9291662	0.0001	alcoholism (heaviness of drinking)	21529783

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9291662