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rs9291662
Organism:
Homo sapiens
Alleles:
G>A
Gene : Feature
None
p-value:
Check p-value
Variation Type:
SNV (Single Nucleotide Variation)
Frequency:
A=0342 (10254/29952,GnomAD)
A=0415 (12102/29118,TOPMED)
A=0416 (2083/5008,1000G)
A=0214 (823/3854,ALSPAC)
A=0223 (827/3708,TWINSUK)
Position:
chr4:18077894 (GRCh38.p7) (4p15.31)
Phenotype:
AD
Dataset:
GWASdb2
Publications:
1 publication(s)
Genomic View:
See rs on genome
Enhancer:
0 Enhancer around
Promoter:
0 Promoter around
Variant Details
Frequency
Publications
p-values
eSNP
meSNP
Genomic Coordinates
Sequence Name
Change(s)
GRCh38.p7 chr 4
NC_000004.12:g.18077894G>A
GRCh37.p13 chr 4
NC_000004.11:g.18079517G>A
Population Frequency
Study
Population
Group
Sample #
Ref Allele
Alt Allele
1000Genomes
African
Sub
1322
G=0.321
A=0.679
1000Genomes
American
Sub
694
G=0.630
A=0.370
1000Genomes
East Asian
Sub
1008
G=0.498
A=0.502
1000Genomes
Europe
Sub
1006
G=0.780
A=0.220
1000Genomes
Global
Study-wide
5008
G=0.584
A=0.416
1000Genomes
South Asian
Sub
978
G=0.790
A=0.210
The Avon Longitudinal Study of Parents and Children
PARENT AND CHILD COHORT
Study-wide
3854
G=0.786
A=0.214
The Genome Aggregation Database
African
Sub
8714
G=0.379
A=0.621
The Genome Aggregation Database
American
Sub
838
G=0.650
A=0.350
The Genome Aggregation Database
East Asian
Sub
1620
G=0.475
A=0.525
The Genome Aggregation Database
Europe
Sub
18478
G=0.803
A=0.196
The Genome Aggregation Database
Global
Study-wide
29952
G=0.657
A=0.342
The Genome Aggregation Database
Other
Sub
302
G=0.790
A=0.210
Trans-Omics for Precision Medicine
Global
Study-wide
29118
G=0.584
A=0.415
UK 10K study - Twins
TWIN COHORT
Study-wide
3708
G=0.777
A=0.223
PMID
Title
Author
Journal
21529783
A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.
Heath AC
Biol Psychiatry
P-Value
SNP ID
p-value
Traits
Study
rs9291662
0.0001
alcoholism (heaviness of drinking)
21529783
eQTL of rs9291662 in Brain tissues (GTEx Analysis Release V7)
Position (v37)
eGene
GeneID
Variant
p-value
TSS
Tissue
There is no eQTL annotation for this SNP
meQTL of rs9291662 in Fetal Brain
Probe ID
Position
Gene
beta
p-value
There is no meQTL annotation for this SNP
Genomic View
GRCh38.p7 chr 4(NC_000004.12:g.18077894G>A)
GRCh37.p13 chr 4(NC_000004.11:g.18079517G>A)
Chromatin Interaction
There is no significant Hi-C chromatin interaction data for this SNP.