SNP Detail Info-rs9295475

Molecule type	Change	Amino acid[Codon]	SO Term
CDKAL1 transcript	NM_017774.3:c.	N/A	Intron Variant
CDKAL1 transcript variant X7	XM_011514718.1:c.	N/A	Intron Variant
CDKAL1 transcript variant X8	XM_011514719.2:c.	N/A	Intron Variant
CDKAL1 transcript variant X9	XM_017010986.1:c.	N/A	Intron Variant
CDKAL1 transcript variant X12	XM_017010987.1:c.	N/A	Intron Variant
CDKAL1 transcript variant X3	XR_001743495.1:n.	N/A	Intron Variant
CDKAL1 transcript variant X4	XR_001743496.1:n.	N/A	Intron Variant
CDKAL1 transcript variant X13	XR_001743500.1:n.	N/A	Intron Variant
CDKAL1 transcript variant X14	XR_001743501.1:n.	N/A	Intron Variant
CDKAL1 transcript variant X1	XR_926265.1:n.	N/A	Intron Variant
CDKAL1 transcript variant X2	XR_926266.1:n.	N/A	Intron Variant
CDKAL1 transcript variant X5	XR_926267.1:n.	N/A	Intron Variant
CDKAL1 transcript variant X9	XR_001743498.1:n.	N/A	Genic Upstream Transcript Variant
CDKAL1 transcript variant X10	XR_001743499.1:n.	N/A	Genic Upstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.579	G=0.421
1000Genomes	American	Sub	694	A=0.780	G=0.220
1000Genomes	East Asian	Sub	1008	A=0.605	G=0.395
1000Genomes	Europe	Sub	1006	A=0.837	G=0.163
1000Genomes	Global	Study-wide	5008	A=0.697	G=0.303
1000Genomes	South Asian	Sub	978	A=0.750	G=0.250
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.829	G=0.171
The Genome Aggregation Database	African	Sub	8704	A=0.615	G=0.385
The Genome Aggregation Database	American	Sub	838	A=0.810	G=0.190
The Genome Aggregation Database	East Asian	Sub	1612	A=0.628	G=0.372
The Genome Aggregation Database	Europe	Sub	18472	A=0.828	G=0.171
The Genome Aggregation Database	Global	Study-wide	29928	A=0.754	G=0.245
The Genome Aggregation Database	Other	Sub	302	A=0.810	G=0.190
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.721	G=0.278
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.827	G=0.173

PMID	Title	Author	Journal
19268276	Genome-wide association study of smoking initiation and current smoking.	Vink JM	Am J Hum Genet

SNP ID	p-value	Traits	Study
rs9295475	6.28E-05	nicotine smoking	19268276

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr6	20680860	20681578	E067	28095
chr6	20681624	20681741	E067	28859
chr6	20681800	20681865	E067	29035
chr6	20660800	20661246	E068	8035
chr6	20661552	20661865	E068	8787
chr6	20661923	20662361	E068	9158
chr6	20680860	20681578	E068	28095
chr6	20681624	20681741	E068	28859
chr6	20681800	20681865	E068	29035
chr6	20640142	20641070	E069	-11695
chr6	20661552	20661865	E069	8787
chr6	20661923	20662361	E069	9158
chr6	20661923	20662361	E070	9158
chr6	20605934	20606146	E071	-46619
chr6	20661552	20661865	E071	8787
chr6	20661923	20662361	E071	9158
chr6	20660800	20661246	E072	8035
chr6	20661552	20661865	E072	8787
chr6	20661923	20662361	E072	9158
chr6	20680860	20681578	E072	28095
chr6	20681624	20681741	E072	28859
chr6	20681800	20681865	E072	29035
chr6	20661923	20662361	E073	9158
chr6	20640142	20641070	E074	-11695
chr6	20657467	20657847	E074	4702
chr6	20661552	20661865	E074	8787
chr6	20661923	20662361	E074	9158
chr6	20680860	20681578	E074	28095
chr6	20608604	20608897	E081	-43868
chr6	20700682	20700943	E081	47917
chr6	20700949	20701024	E081	48184
chr6	20604523	20604671	E082	-48094
chr6	20695335	20695421	E082	42570
chr6	20700682	20700943	E082	47917
chr6	20700949	20701024	E082	48184

rs9295475