SNP Detail Info-rs929892

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0346 (10368/29956,GnomAD)
A=0434 (12648/29118,TOPMED)
A=0485 (2427/5008,1000G)
A=0146 (564/3854,ALSPAC)
A=0128 (476/3708,TWINSUK)

Position: chr16:82198839 (GRCh38.p7) (16q23.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 19 Enhancers around

Promoter: 10 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 16	NC_000016.10:g.82198839G>A
GRCh37.p13 chr 16	NC_000016.9:g.82232444G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.176	A=0.824
1000Genomes	American	Sub	694	G=0.530	A=0.470
1000Genomes	East Asian	Sub	1008	G=0.621	A=0.379
1000Genomes	Europe	Sub	1006	G=0.843	A=0.157
1000Genomes	Global	Study-wide	5008	G=0.515	A=0.485
1000Genomes	South Asian	Sub	978	G=0.520	A=0.480
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.854	A=0.146
The Genome Aggregation Database	African	Sub	8712	G=0.268	A=0.732
The Genome Aggregation Database	American	Sub	836	G=0.480	A=0.520
The Genome Aggregation Database	East Asian	Sub	1616	G=0.674	A=0.326
The Genome Aggregation Database	Europe	Sub	18490	G=0.839	A=0.160
The Genome Aggregation Database	Global	Study-wide	29956	G=0.653	A=0.346
The Genome Aggregation Database	Other	Sub	302	G=0.780	A=0.220
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.565	A=0.434
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.872	A=0.128

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs929892	1.82E-05	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr16	82202381	82202446	E067	-29998
chr16	82223529	82224363	E068	-8081
chr16	82281727	82281834	E068	49283
chr16	82281945	82282010	E068	49501
chr16	82282026	82282077	E068	49582
chr16	82282281	82282335	E068	49837
chr16	82202381	82202446	E070	-29998
chr16	82202381	82202446	E071	-29998
chr16	82204678	82204761	E071	-27683
chr16	82223529	82224363	E071	-8081
chr16	82193965	82194250	E072	-38194
chr16	82202381	82202446	E072	-29998
chr16	82202381	82202446	E074	-29998
chr16	82222817	82223046	E074	-9398
chr16	82223529	82224363	E074	-8081
chr16	82194999	82195387	E081	-37057
chr16	82195682	82195722	E081	-36722
chr16	82202381	82202446	E081	-29998
chr16	82204678	82204761	E081	-27683

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr16	82203209	82204552	E067	-27892
chr16	82203209	82204552	E068	-27892
chr16	82203209	82204552	E069	-27892
chr16	82203209	82204552	E070	-27892
chr16	82203209	82204552	E071	-27892
chr16	82203209	82204552	E072	-27892
chr16	82203209	82204552	E073	-27892
chr16	82203209	82204552	E074	-27892
chr16	82203209	82204552	E081	-27892
chr16	82203209	82204552	E082	-27892

rs929892