rs9299372

Homo sapiens
A>C
None
Check p-value
SNV (Single Nucleotide Variation)
A==0329 (9857/29888,GnomAD)
A==0325 (9480/29118,TOPMED)
A==0307 (1535/5008,1000G)
A==0390 (1504/3854,ALSPAC)
A==0388 (1439/3708,TWINSUK)
chr9:103541971 (GRCh38.p7) (9q31.1)
AD
GWASdb2
1   publication(s)
See rs on genome
5 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.103541971A>C
GRCh37.p13 chr 9NC_000009.11:g.106304253A>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.247C=0.753
1000GenomesAmericanSub694A=0.390C=0.610
1000GenomesEast AsianSub1008A=0.269C=0.731
1000GenomesEuropeSub1006A=0.369C=0.631
1000GenomesGlobalStudy-wide5008A=0.307C=0.693
1000GenomesSouth AsianSub978A=0.310C=0.690
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.390C=0.610
The Genome Aggregation DatabaseAfricanSub8698A=0.266C=0.734
The Genome Aggregation DatabaseAmericanSub836A=0.340C=0.660
The Genome Aggregation DatabaseEast AsianSub1616A=0.259C=0.741
The Genome Aggregation DatabaseEuropeSub18436A=0.365C=0.634
The Genome Aggregation DatabaseGlobalStudy-wide29888A=0.329C=0.670
The Genome Aggregation DatabaseOtherSub302A=0.300C=0.700
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.325C=0.674
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.388C=0.612
PMID Title Author Journal
21529783A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.Heath ACBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs92993729.4E-05alcoholism (heaviness of drinking)21529783

eQTL of rs9299372 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9299372 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr9106266575106266625E074-37628
chr9106266641106266720E074-37533
chr9106266960106267040E074-37213
chr9106267100106267206E074-37047
chr9106267273106267329E074-36924