SNP Detail Info-rs9301980

Organism: Homo sapiens

Alleles: T>A / T>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0113 (3402/29958,GnomAD)
G=0136 (3968/29118,TOPMED)
G=0108 (541/5008,1000G)
G=0104 (400/3854,ALSPAC)
G=0104 (384/3708,TWINSUK)

Position: chr13:87091772 (GRCh38.p7) (13q31.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.818	G=0.182
1000Genomes	American	Sub	694	T=0.920	G=0.080
1000Genomes	East Asian	Sub	1008	T=0.968	G=0.032
1000Genomes	Europe	Sub	1006	T=0.906	G=0.094
1000Genomes	Global	Study-wide	5008	T=0.892	G=0.108
1000Genomes	South Asian	Sub	978	T=0.880	G=0.120
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.896	G=0.104
The Genome Aggregation Database	African	Sub	8706	T=0.813	G=0.187
The Genome Aggregation Database	American	Sub	838	T=0.920	G=0.080
The Genome Aggregation Database	East Asian	Sub	1622	T=0.954	G=0.046
The Genome Aggregation Database	Europe	Sub	18490	T=0.913	G=0.086
The Genome Aggregation Database	Global	Study-wide	29958	T=0.886	G=0.113
The Genome Aggregation Database	Other	Sub	302	T=0.850	G=0.150
Trans-Omics for Precision Medicine	Global	Study-wide	29118	T=0.863	G=0.136
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.896	G=0.104

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs9301980	0.000127	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9301980