SNP Detail Info-rs9304638

Organism: Homo sapiens

Alleles: C>G / C>T

Gene : Feature

ZNF225 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

C==0218 (6556/29976,GnomAD)
C==0244 (7128/29118,TOPMED)
C==0328 (1643/5008,1000G)

Position: chr19:44129933 (GRCh38.p7) (19q13.31)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 30 Enhancers around

Promoter: 1 Promoter around

Molecule type	Change	Amino acid[Codon]	SO Term
ZNF225 transcript variant 2	NM_001321685.1:c.	N/A	Intron Variant
ZNF225 transcript variant 1	NM_013362.3:c.	N/A	Intron Variant
ZNF225 transcript variant X3	XM_005259223.3:c.	N/A	Intron Variant
ZNF225 transcript variant X1	XM_011527285.2:c.	N/A	Intron Variant
ZNF225 transcript variant X2	XM_011527286.2:c.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.374	T=0.626
1000Genomes	American	Sub	694	C=0.420	T=0.580
1000Genomes	East Asian	Sub	1008	C=0.496	T=0.504
1000Genomes	Europe	Sub	1006	C=0.130	T=0.870
1000Genomes	Global	Study-wide	5008	C=0.328	T=0.672
1000Genomes	South Asian	Sub	978	C=0.230	T=0.770
The Genome Aggregation Database	African	Sub	8724	C=0.329	T=0.671
The Genome Aggregation Database	American	Sub	836	C=0.440	T=0.560
The Genome Aggregation Database	East Asian	Sub	1614	C=0.454	T=0.546
The Genome Aggregation Database	Europe	Sub	18500	C=0.137	T=0.862
The Genome Aggregation Database	Global	Study-wide	29976	C=0.218	T=0.781
The Genome Aggregation Database	Other	Sub	302	C=0.130	T=0.870
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.244	T=0.755

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs9304638	7.16E-05	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr19	13699930	13700512	E068	-9340
chr19	13699930	13700512	E069	-9340
chr19	13733412	13733859	E070	23560
chr19	13733927	13734573	E070	24075
chr19	13734607	13734753	E070	24755
chr19	13734914	13735107	E070	25062
chr19	13735168	13735256	E070	25316
chr19	13735313	13735756	E070	25461
chr19	13733412	13733859	E071	23560
chr19	13733927	13734573	E071	24075
chr19	13735168	13735256	E071	25316
chr19	13735313	13735756	E071	25461
chr19	13726737	13727021	E073	16885
chr19	13734607	13734753	E073	24755
chr19	13726737	13727021	E081	16885
chr19	13727423	13727508	E081	17571
chr19	13727790	13727865	E081	17938
chr19	13727946	13728087	E081	18094
chr19	13732258	13732739	E081	22406
chr19	13732964	13733042	E081	23112
chr19	13733212	13733300	E081	23360
chr19	13733412	13733859	E081	23560
chr19	13733927	13734573	E081	24075
chr19	13734607	13734753	E081	24755
chr19	13734914	13735107	E081	25062
chr19	13735168	13735256	E081	25316
chr19	13735313	13735756	E081	25461
chr19	13736133	13736187	E081	26281
chr19	13736384	13736564	E082	26532
chr19	13743712	13744383	E082	33860

rs9304638