rs9307379

Homo sapiens
G>C / G>T
None
Check p-value
SNV (Single Nucleotide Variation)
C=0060 (1825/29952,GnomAD)
C=0097 (487/5008,1000G)
C=0032 (124/3854,ALSPAC)
C=0023 (85/3708,TWINSUK)
chr4:112229132 (GRCh38.p7) (4q25)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 4NC_000004.12:g.112229132G>C
GRCh38.p7 chr 4NC_000004.12:g.112229132G>T
GRCh37.p13 chr 4NC_000004.11:g.113150288G>C
GRCh37.p13 chr 4NC_000004.11:g.113150288G>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.881C=0.119
1000GenomesAmericanSub694G=0.900C=0.100
1000GenomesEast AsianSub1008G=0.906C=0.094
1000GenomesEuropeSub1006G=0.963C=0.037
1000GenomesGlobalStudy-wide5008G=0.903C=0.097
1000GenomesSouth AsianSub978G=0.870C=0.130
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.968C=0.032
The Genome Aggregation DatabaseAfricanSub8698G=0.900T=0.000
The Genome Aggregation DatabaseAmericanSub838G=0.890T=0.00,
The Genome Aggregation DatabaseEast AsianSub1622G=0.904T=0.000
The Genome Aggregation DatabaseEuropeSub18492G=0.963T=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29952G=0.939T=0.000
The Genome Aggregation DatabaseOtherSub302G=0.920T=0.00,
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.977C=0.023
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs93073790.000745alcohol dependence21314694

eQTL of rs9307379 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9307379 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.