SNP Detail Info-rs9308148

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

INPP4B : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0092 (2772/29922,GnomAD)
G=0129 (3773/29118,TOPMED)
G=0104 (519/5008,1000G)
G=0053 (203/3854,ALSPAC)
G=0052 (194/3708,TWINSUK)

Position: chr4:142177786 (GRCh38.p7) (4q31.21)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 4	NC_000004.12:g.142177786A>G
GRCh37.p13 chr 4	NC_000004.11:g.143098939A>G

Molecule type	Change	Amino acid[Codon]	SO Term
INPP4B transcript variant 2	NM_001101669.1:c.	N/A	Intron Variant
INPP4B transcript variant 1	NM_003866.2:c.	N/A	Intron Variant
INPP4B transcript variant X9	XM_005263323.3:c.	N/A	Intron Variant
INPP4B transcript variant X11	XM_005263325.3:c.	N/A	Intron Variant
INPP4B transcript variant X1	XM_011532391.2:c.	N/A	Intron Variant
INPP4B transcript variant X2	XM_011532392.2:c.	N/A	Intron Variant
INPP4B transcript variant X4	XM_017008794.1:c.	N/A	Intron Variant
INPP4B transcript variant X6	XM_017008795.1:c.	N/A	Intron Variant
INPP4B transcript variant X7	XM_017008796.1:c.	N/A	Intron Variant
INPP4B transcript variant X8	XM_017008797.1:c.	N/A	Intron Variant
INPP4B transcript variant X10	XM_017008798.1:c.	N/A	Intron Variant
INPP4B transcript variant X10	XR_001741343.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.759	G=0.241
1000Genomes	American	Sub	694	A=0.940	G=0.060
1000Genomes	East Asian	Sub	1008	A=0.968	G=0.032
1000Genomes	Europe	Sub	1006	A=0.946	G=0.054
1000Genomes	Global	Study-wide	5008	A=0.896	G=0.104
1000Genomes	South Asian	Sub	978	A=0.930	G=0.070
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.947	G=0.053
The Genome Aggregation Database	African	Sub	8698	A=0.804	G=0.196
The Genome Aggregation Database	American	Sub	832	A=0.930	G=0.070
The Genome Aggregation Database	East Asian	Sub	1610	A=0.947	G=0.053
The Genome Aggregation Database	Europe	Sub	18482	A=0.952	G=0.047
The Genome Aggregation Database	Global	Study-wide	29922	A=0.907	G=0.092
The Genome Aggregation Database	Other	Sub	300	A=0.810	G=0.190
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.870	G=0.129
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.948	G=0.052

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs9308148	7.79E-05	alcohol dependence	21314694

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9308148