rs9308632

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
T==0298 (8935/29900,GnomAD)
T==0271 (7911/29116,TOPMED)
T==0276 (1380/5008,1000G)
T==0364 (1401/3854,ALSPAC)
T==0360 (1336/3708,TWINSUK)
chr2:111684984 (GRCh38.p7) (2q13)
ND
GWASdb2
1   publication(s)
See rs on genome
30 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.111684984T>C
GRCh37.p13 chr 2NC_000002.11:g.112442561T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.151C=0.849
1000GenomesAmericanSub694T=0.330C=0.670
1000GenomesEast AsianSub1008T=0.321C=0.679
1000GenomesEuropeSub1006T=0.345C=0.655
1000GenomesGlobalStudy-wide5008T=0.276C=0.724
1000GenomesSouth AsianSub978T=0.290C=0.710
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.364C=0.636
The Genome Aggregation DatabaseAfricanSub8690T=0.185C=0.815
The Genome Aggregation DatabaseAmericanSub838T=0.350C=0.650
The Genome Aggregation DatabaseEast AsianSub1616T=0.285C=0.715
The Genome Aggregation DatabaseEuropeSub18456T=0.350C=0.649
The Genome Aggregation DatabaseGlobalStudy-wide29900T=0.298C=0.701
The Genome Aggregation DatabaseOtherSub300T=0.320C=0.680
Trans-Omics for Precision MedicineGlobalStudy-wide29116T=0.271C=0.728
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.360C=0.640
PMID Title Author Journal
22377092ANAPC1 and SLCO3A1 are associated with nicotine dependence: meta-analysis of genome-wide association studies.Wang KSDrug Alcohol Depend

P-Value

SNP ID p-value Traits Study
rs93086321.07E-05nicotine dependence (smoking)22377092

eQTL of rs9308632 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9308632 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr2112462901112464321E07020340
chr2112464516112464643E07021955
chr2112433581112433731E072-8830
chr2112419497112419604E081-22957
chr2112419728112420435E081-22126
chr2112420457112420513E081-22048
chr2112420740112420891E081-21670
chr2112433352112433490E081-9071
chr2112433581112433731E081-8830
chr2112434054112434302E081-8259
chr2112434448112434529E081-8032
chr2112435017112435057E081-7504
chr2112435151112435211E081-7350
chr2112435485112435572E081-6989
chr2112435883112436108E081-6453
chr2112436209112436591E081-5970
chr2112436641112436704E081-5857
chr2112436753112437061E081-5500
chr2112449091112449472E0816530
chr2112449553112449603E0816992
chr2112449709112449759E0817148
chr2112449868112450073E0817307
chr2112456326112457104E08113765
chr2112462901112464321E08120340
chr2112465304112465370E08122743
chr2112466166112466234E08123605
chr2112466329112466623E08123768
chr2112436209112436591E082-5970
chr2112456326112457104E08213765
chr2112462901112464321E08220340