SNP Detail Info-rs9310862

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0472 (14142/29914,GnomAD)
A=0478 (13932/29118,TOPMED)
G==0484 (2425/5008,1000G)
A=0500 (1926/3854,ALSPAC)
A=0495 (1835/3708,TWINSUK)

Position: chr3:28165386 (GRCh38.p7) (3p24.1)

Phenotype: AD

Dataset:

GWASCatalog

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 5 Enhancers around

Promoter: 2 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 3	NC_000003.12:g.28165386G>A
GRCh37.p13 chr 3	NC_000003.11:g.28206877G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.579	A=0.421
1000Genomes	American	Sub	694	G=0.520	A=0.480
1000Genomes	East Asian	Sub	1008	G=0.415	A=0.585
1000Genomes	Europe	Sub	1006	G=0.479	A=0.521
1000Genomes	Global	Study-wide	5008	G=0.484	A=0.516
1000Genomes	South Asian	Sub	978	G=0.410	A=0.590
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.500	A=0.500
The Genome Aggregation Database	African	Sub	8710	G=0.573	A=0.427
The Genome Aggregation Database	American	Sub	832	G=0.540	A=0.460
The Genome Aggregation Database	East Asian	Sub	1614	G=0.388	A=0.612
The Genome Aggregation Database	Europe	Sub	18456	G=0.517	A=0.482
The Genome Aggregation Database	Global	Study-wide	29914	G=0.527	A=0.472
The Genome Aggregation Database	Other	Sub	302	G=0.510	A=0.490
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.521	A=0.478
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.505	A=0.495

PMID	Title	Author	Journal
23942779	A genome-wide association study of behavioral disinhibition.	McGue M	Behav Genet

SNP ID	p-value	Traits	Study
rs9310862	4E-06	alcohol dependence	23942779

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr3	28196647	28196847	E081	-10030
chr3	28196857	28197467	E081	-9410
chr3	28197496	28197570	E081	-9307
chr3	28196647	28196847	E082	-10030
chr3	28196857	28197467	E082	-9410

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr3	28242180	28242293	E070	35303
chr3	28242180	28242293	E082	35303

rs9310862