Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 4 | NC_000004.12:g.67484590T>C |
GRCh38.p7 chr 4 | NC_000004.12:g.67484590T>G |
GRCh37.p13 chr 4 | NC_000004.11:g.68350308T>C |
GRCh37.p13 chr 4 | NC_000004.11:g.68350308T>G |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
CENPC transcript | NM_001812.2:c. | N/A | Intron Variant |
CENPC transcript variant X1 | XM_006714064.2:c. | N/A | Intron Variant |
CENPC transcript variant X3 | XM_011531542.2:c. | N/A | Genic Downstream Transcript Variant |
CENPC transcript variant X2 | XR_245245.3:n. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | T=0.395 | C=0.605 |
1000Genomes | American | Sub | 694 | T=0.250 | C=0.750 |
1000Genomes | East Asian | Sub | 1008 | T=0.174 | C=0.826 |
1000Genomes | Europe | Sub | 1006 | T=0.375 | C=0.625 |
1000Genomes | Global | Study-wide | 5008 | T=0.304 | C=0.696 |
1000Genomes | South Asian | Sub | 978 | T=0.280 | C=0.720 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | T=0.391 | C=0.609 |
The Genome Aggregation Database | African | Sub | 8688 | T=0.380 | G=0.000 |
The Genome Aggregation Database | American | Sub | 838 | T=0.240 | G=0.00, |
The Genome Aggregation Database | East Asian | Sub | 1620 | T=0.175 | G=0.001 |
The Genome Aggregation Database | Europe | Sub | 18468 | T=0.422 | G=0.000 |
The Genome Aggregation Database | Global | Study-wide | 29916 | T=0.390 | G=0.000 |
The Genome Aggregation Database | Other | Sub | 302 | T=0.320 | G=0.00, |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | T=0.372 | C=0.627 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | T=0.397 | C=0.603 |
PMID | Title | Author | Journal |
---|---|---|---|
20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs9312182 | 0.00092 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr4 | 185427848 | 185428119 | E067 | -32203 |
chr4 | 185433085 | 185433164 | E067 | -27158 |
chr4 | 185434953 | 185435023 | E067 | -25299 |
chr4 | 185435109 | 185436158 | E067 | -24164 |
chr4 | 185436244 | 185436294 | E067 | -24028 |
chr4 | 185450033 | 185450190 | E067 | -10132 |
chr4 | 185454845 | 185454929 | E067 | -5393 |
chr4 | 185454957 | 185455007 | E067 | -5315 |
chr4 | 185455283 | 185455335 | E067 | -4987 |
chr4 | 185455348 | 185455395 | E067 | -4927 |
chr4 | 185455501 | 185456512 | E067 | -3810 |
chr4 | 185456688 | 185456763 | E067 | -3559 |
chr4 | 185456935 | 185457082 | E067 | -3240 |
chr4 | 185457142 | 185457248 | E067 | -3074 |
chr4 | 185457330 | 185457425 | E067 | -2897 |
chr4 | 185424966 | 185425050 | E068 | -35272 |
chr4 | 185427848 | 185428119 | E068 | -32203 |
chr4 | 185433085 | 185433164 | E068 | -27158 |
chr4 | 185433263 | 185433330 | E068 | -26992 |
chr4 | 185436244 | 185436294 | E068 | -24028 |
chr4 | 185436918 | 185436992 | E068 | -23330 |
chr4 | 185450033 | 185450190 | E068 | -10132 |
chr4 | 185450459 | 185450788 | E068 | -9534 |
chr4 | 185456688 | 185456763 | E068 | -3559 |
chr4 | 185456935 | 185457082 | E068 | -3240 |
chr4 | 185457142 | 185457248 | E068 | -3074 |
chr4 | 185457330 | 185457425 | E068 | -2897 |
chr4 | 185424966 | 185425050 | E069 | -35272 |
chr4 | 185425557 | 185425654 | E069 | -34668 |
chr4 | 185427848 | 185428119 | E069 | -32203 |
chr4 | 185433085 | 185433164 | E069 | -27158 |
chr4 | 185433263 | 185433330 | E069 | -26992 |
chr4 | 185433441 | 185433553 | E069 | -26769 |
chr4 | 185434953 | 185435023 | E069 | -25299 |
chr4 | 185435109 | 185436158 | E069 | -24164 |
chr4 | 185436244 | 185436294 | E069 | -24028 |
chr4 | 185436918 | 185436992 | E069 | -23330 |
chr4 | 185450033 | 185450190 | E069 | -10132 |
chr4 | 185450459 | 185450788 | E069 | -9534 |
chr4 | 185452083 | 185452161 | E069 | -8161 |
chr4 | 185455501 | 185456512 | E069 | -3810 |
chr4 | 185456688 | 185456763 | E069 | -3559 |
chr4 | 185456935 | 185457082 | E069 | -3240 |
chr4 | 185457142 | 185457248 | E069 | -3074 |
chr4 | 185457330 | 185457425 | E069 | -2897 |
chr4 | 185433085 | 185433164 | E070 | -27158 |
chr4 | 185424966 | 185425050 | E071 | -35272 |
chr4 | 185427848 | 185428119 | E071 | -32203 |
chr4 | 185433085 | 185433164 | E071 | -27158 |
chr4 | 185433263 | 185433330 | E071 | -26992 |
chr4 | 185433441 | 185433553 | E071 | -26769 |
chr4 | 185434953 | 185435023 | E071 | -25299 |
chr4 | 185436244 | 185436294 | E071 | -24028 |
chr4 | 185436918 | 185436992 | E071 | -23330 |
chr4 | 185450033 | 185450190 | E071 | -10132 |
chr4 | 185450459 | 185450788 | E071 | -9534 |
chr4 | 185454845 | 185454929 | E071 | -5393 |
chr4 | 185454957 | 185455007 | E071 | -5315 |
chr4 | 185455283 | 185455335 | E071 | -4987 |
chr4 | 185455348 | 185455395 | E071 | -4927 |
chr4 | 185455501 | 185456512 | E071 | -3810 |
chr4 | 185456688 | 185456763 | E071 | -3559 |
chr4 | 185456935 | 185457082 | E071 | -3240 |
chr4 | 185457142 | 185457248 | E071 | -3074 |
chr4 | 185457330 | 185457425 | E071 | -2897 |
chr4 | 185424966 | 185425050 | E072 | -35272 |
chr4 | 185425557 | 185425654 | E072 | -34668 |
chr4 | 185427848 | 185428119 | E072 | -32203 |
chr4 | 185433085 | 185433164 | E072 | -27158 |
chr4 | 185433263 | 185433330 | E072 | -26992 |
chr4 | 185433441 | 185433553 | E072 | -26769 |
chr4 | 185434953 | 185435023 | E072 | -25299 |
chr4 | 185436244 | 185436294 | E072 | -24028 |
chr4 | 185436918 | 185436992 | E072 | -23330 |
chr4 | 185450033 | 185450190 | E072 | -10132 |
chr4 | 185450459 | 185450788 | E072 | -9534 |
chr4 | 185456935 | 185457082 | E072 | -3240 |
chr4 | 185457142 | 185457248 | E072 | -3074 |
chr4 | 185457330 | 185457425 | E072 | -2897 |
chr4 | 185427848 | 185428119 | E073 | -32203 |
chr4 | 185434953 | 185435023 | E073 | -25299 |
chr4 | 185435109 | 185436158 | E073 | -24164 |
chr4 | 185436244 | 185436294 | E073 | -24028 |
chr4 | 185457142 | 185457248 | E073 | -3074 |
chr4 | 185457330 | 185457425 | E073 | -2897 |
chr4 | 185424966 | 185425050 | E074 | -35272 |
chr4 | 185427848 | 185428119 | E074 | -32203 |
chr4 | 185433085 | 185433164 | E074 | -27158 |
chr4 | 185433263 | 185433330 | E074 | -26992 |
chr4 | 185433441 | 185433553 | E074 | -26769 |
chr4 | 185434953 | 185435023 | E074 | -25299 |
chr4 | 185435109 | 185436158 | E074 | -24164 |
chr4 | 185436244 | 185436294 | E074 | -24028 |
chr4 | 185436918 | 185436992 | E074 | -23330 |
chr4 | 185450033 | 185450190 | E074 | -10132 |
chr4 | 185450459 | 185450788 | E074 | -9534 |
chr4 | 185455501 | 185456512 | E074 | -3810 |
chr4 | 185456688 | 185456763 | E074 | -3559 |
chr4 | 185456935 | 185457082 | E074 | -3240 |
chr4 | 185457142 | 185457248 | E074 | -3074 |
chr4 | 185457330 | 185457425 | E074 | -2897 |
chr4 | 185424966 | 185425050 | E081 | -35272 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr4 | 185457910 | 185459735 | E067 | -587 |
chr4 | 185457910 | 185459735 | E068 | -587 |
chr4 | 185457910 | 185459735 | E069 | -587 |
chr4 | 185457910 | 185459735 | E070 | -587 |
chr4 | 185457910 | 185459735 | E071 | -587 |
chr4 | 185457910 | 185459735 | E072 | -587 |
chr4 | 185457910 | 185459735 | E073 | -587 |
chr4 | 185457910 | 185459735 | E074 | -587 |
chr4 | 185457910 | 185459735 | E081 | -587 |
chr4 | 185457910 | 185459735 | E082 | -587 |