rs9316778

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0112 (3356/29904,GnomAD)
C=0134 (3915/29116,TOPMED)
C=0138 (692/5008,1000G)
C=0060 (232/3854,ALSPAC)
C=0070 (258/3708,TWINSUK)
chr13:55287020 (GRCh38.p7) (13q21.1)
AD
GWASdb2
1   publication(s)
See rs on genome
7 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.55287020T>C
GRCh37.p13 chr 13NC_000013.10:g.55861155T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.775C=0.225
1000GenomesAmericanSub694T=0.780C=0.220
1000GenomesEast AsianSub1008T=0.905C=0.095
1000GenomesEuropeSub1006T=0.949C=0.051
1000GenomesGlobalStudy-wide5008T=0.862C=0.138
1000GenomesSouth AsianSub978T=0.900C=0.100
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.940C=0.060
The Genome Aggregation DatabaseAfricanSub8716T=0.797C=0.203
The Genome Aggregation DatabaseAmericanSub830T=0.770C=0.230
The Genome Aggregation DatabaseEast AsianSub1596T=0.907C=0.093
The Genome Aggregation DatabaseEuropeSub18460T=0.932C=0.067
The Genome Aggregation DatabaseGlobalStudy-wide29904T=0.887C=0.112
The Genome Aggregation DatabaseOtherSub302T=0.970C=0.030
Trans-Omics for Precision MedicineGlobalStudy-wide29116T=0.865C=0.134
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.930C=0.070
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs93167780.000535alcohol dependence20201924

eQTL of rs9316778 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9316778 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr135588852155888717E06927366
chr135588852155888717E07027366
chr135588896455889024E07027809
chr135588932855889464E07028173
chr135588852155888717E07127366
chr135588896455889024E07127809
chr135588932855889464E07128173