rs9324268

Homo sapiens
C>T
LOC105370370 : Non Coding Transcript Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0265 (7916/29876,GnomAD)
T=0279 (8125/29118,TOPMED)
T=0334 (1674/5008,1000G)
T=0197 (761/3854,ALSPAC)
T=0195 (723/3708,TWINSUK)
chr13:112182341 (GRCh38.p7) (13q34)
AD
GWASCatalog
1   publication(s)
See rs on genome
107 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.112182341C>T
GRCh37.p13 chr 13NC_000013.10:g.112836655C>T

Gene: LOC105370370, uncharacterized LOC105370370(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC105370370 transcript variant X1XR_944282.1:n.148...XR_944282.1:n.1487G>AG>ANon Coding Transcript Variant
LOC105370370 transcript variant X4XR_944284.1:n.112...XR_944284.1:n.1127G>AG>ANon Coding Transcript Variant
LOC105370370 transcript variant X3XR_944285.1:n.148...XR_944285.1:n.1487G>AG>ANon Coding Transcript Variant
LOC105370370 transcript variant X5XR_944286.1:n.201...XR_944286.1:n.2012G>AG>ANon Coding Transcript Variant
LOC105370370 transcript variant X6XR_944287.1:n.165...XR_944287.1:n.1652G>AG>ANon Coding Transcript Variant
LOC105370370 transcript variant X7XR_944288.1:n.140...XR_944288.1:n.1403G>AG>ANon Coding Transcript Variant
LOC105370370 transcript variant X2XR_944283.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.575T=0.425
1000GenomesAmericanSub694C=0.810T=0.190
1000GenomesEast AsianSub1008C=0.503T=0.497
1000GenomesEuropeSub1006C=0.819T=0.181
1000GenomesGlobalStudy-wide5008C=0.666T=0.334
1000GenomesSouth AsianSub978C=0.690T=0.310
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.803T=0.197
The Genome Aggregation DatabaseAfricanSub8700C=0.634T=0.366
The Genome Aggregation DatabaseAmericanSub838C=0.760T=0.240
The Genome Aggregation DatabaseEast AsianSub1610C=0.488T=0.512
The Genome Aggregation DatabaseEuropeSub18426C=0.801T=0.198
The Genome Aggregation DatabaseGlobalStudy-wide29876C=0.735T=0.265
The Genome Aggregation DatabaseOtherSub302C=0.850T=0.150
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.721T=0.279
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.805T=0.195
PMID Title Author Journal
29460428Genomewide Association Study of Alcohol Dependence and Related Traits in a Thai Population.Gelernter JAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs93242685E-06alcohol dependence29460428

eQTL of rs9324268 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9324268 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr13112813809112814386E067-22269
chr13112814402112814619E067-22036
chr13112826302112826416E067-10239
chr13112826419112826469E067-10186
chr13112826603112826653E067-10002
chr13112826767112826828E067-9827
chr13112813634112813746E068-22909
chr13112813809112814386E068-22269
chr13112814402112814619E068-22036
chr13112873377112873632E06836722
chr13112813356112813487E069-23168
chr13112813634112813746E069-22909
chr13112813809112814386E069-22269
chr13112814402112814619E069-22036
chr13112814784112814839E069-21816
chr13112814976112815193E069-21462
chr13112798778112798876E070-37779
chr13112799180112799234E070-37421
chr13112799594112799670E070-36985
chr13112799761112799936E070-36719
chr13112799974112800082E070-36573
chr13112800219112800306E070-36349
chr13112800493112800550E070-36105
chr13112800807112800898E070-35757
chr13112800965112801017E070-35638
chr13112813281112813332E070-23323
chr13112813356112813487E070-23168
chr13112813634112813746E070-22909
chr13112813809112814386E070-22269
chr13112814402112814619E070-22036
chr13112814784112814839E070-21816
chr13112814976112815193E070-21462
chr13112816763112816952E070-19703
chr13112817021112817087E070-19568
chr13112817144112817444E070-19211
chr13112826302112826416E070-10239
chr13112826419112826469E070-10186
chr13112826603112826653E070-10002
chr13112826767112826828E070-9827
chr13112826966112827412E070-9243
chr13112827452112827800E070-8855
chr13112857445112857485E07020790
chr13112857586112857992E07020931
chr13112858124112858261E07021469
chr13112858301112858383E07021646
chr13112858665112858878E07022010
chr13112858894112859061E07022239
chr13112871812112871888E07035157
chr13112871921112871979E07035266
chr13112872738112872788E07036083
chr13112872884112872959E07036229
chr13112873377112873632E07036722
chr13112874452112874496E07037797
chr13112874800112874889E07038145
chr13112875413112875482E07038758
chr13112875710112875808E07039055
chr13112813356112813487E071-23168
chr13112813634112813746E071-22909
chr13112813809112814386E071-22269
chr13112814402112814619E071-22036
chr13112858665112858878E07122010
chr13112858894112859061E07122239
chr13112873377112873632E07136722
chr13112813809112814386E072-22269
chr13112814402112814619E072-22036
chr13112814784112814839E072-21816
chr13112814976112815193E072-21462
chr13112826302112826416E072-10239
chr13112826419112826469E072-10186
chr13112826603112826653E072-10002
chr13112826767112826828E072-9827
chr13112858124112858261E07221469
chr13112858301112858383E07221646
chr13112858665112858878E07222010
chr13112826302112826416E073-10239
chr13112826419112826469E073-10186
chr13112826603112826653E073-10002
chr13112826767112826828E073-9827
chr13112831856112832252E073-4403
chr13112832278112832350E073-4305
chr13112858665112858878E07322010
chr13112813634112813746E074-22909
chr13112813809112814386E074-22269
chr13112814402112814619E074-22036
chr13112814784112814839E074-21816
chr13112814976112815193E074-21462
chr13112858124112858261E07421469
chr13112858301112858383E07421646
chr13112858665112858878E07422010
chr13112786733112786783E081-49872
chr13112814402112814619E081-22036
chr13112814784112814839E081-21816
chr13112814976112815193E081-21462
chr13112819863112820258E081-16397
chr13112858124112858261E08121469
chr13112858301112858383E08121646
chr13112858665112858878E08122010
chr13112858894112859061E08122239
chr13112813634112813746E082-22909
chr13112814402112814619E082-22036
chr13112814784112814839E082-21816
chr13112814976112815193E082-21462
chr13112819379112819429E082-17226
chr13112858665112858878E08222010
chr13112858894112859061E08222239
chr13112873377112873632E08236722
chr13112886534112886611E08249879