rs9329136

Homo sapiens
G>A
GMCL1P1 : Non Coding Transcript Variant
Check p-value
SNV (Single Nucleotide Variation)
G==0221 (6645/29950,GnomAD)
G==0259 (7549/29118,TOPMED)
G==0187 (938/5008,1000G)
G==0145 (560/3854,ALSPAC)
G==0142 (528/3708,TWINSUK)
chr5:178184647 (GRCh38.p7) (5q35.3)
AD
GWASdb2
1   publication(s)
See rs on genome
93 Enhancers around
47 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 5NC_000005.10:g.178184647G>A
GRCh37.p13 chr 5NC_000005.9:g.177611648G>A

Gene: GMCL1P1, germ cell-less, spermatogenesis associated 1 pseudogene 1(minus strand)

Molecule type Change Amino acid[Codon] SO Term
Non-protein-coding transcriptsNR_003281.1:n.278...NR_003281.1:n.2786C>TC>TNon Coding Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.467A=0.533
1000GenomesAmericanSub694G=0.150A=0.850
1000GenomesEast AsianSub1008G=0.022A=0.978
1000GenomesEuropeSub1006G=0.127A=0.873
1000GenomesGlobalStudy-wide5008G=0.187A=0.813
1000GenomesSouth AsianSub978G=0.070A=0.930
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.145A=0.855
The Genome Aggregation DatabaseAfricanSub8710G=0.436A=0.564
The Genome Aggregation DatabaseAmericanSub834G=0.120A=0.880
The Genome Aggregation DatabaseEast AsianSub1616G=0.002A=0.998
The Genome Aggregation DatabaseEuropeSub18488G=0.146A=0.853
The Genome Aggregation DatabaseGlobalStudy-wide29950G=0.221A=0.778
The Genome Aggregation DatabaseOtherSub302G=0.100A=0.900
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.259A=0.740
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.142A=0.858
PMID Title Author Journal
21703634A meta-analysis of two genome-wide association studies identifies 3 new loci for alcohol dependence.Wang KSJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs93291365.91E-05alcohol dependence21703634

eQTL of rs9329136 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9329136 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr5177578833177578896E067-32752
chr5177579529177579619E067-32029
chr5177633799177634006E06722151
chr5177656761177656845E06745113
chr5177656884177656946E06745236
chr5177657023177657131E06745375
chr5177657264177657318E06745616
chr5177657405177657459E06745757
chr5177657660177657762E06746012
chr5177578395177578494E068-33154
chr5177578551177578723E068-32925
chr5177578833177578896E068-32752
chr5177579529177579619E068-32029
chr5177633799177634006E06822151
chr5177634057177634818E06822409
chr5177634826177634972E06823178
chr5177657660177657762E06846012
chr5177579529177579619E069-32029
chr5177633799177634006E06922151
chr5177634057177634818E06922409
chr5177656761177656845E06945113
chr5177656884177656946E06945236
chr5177657023177657131E06945375
chr5177657264177657318E06945616
chr5177657405177657459E06945757
chr5177657660177657762E06946012
chr5177578551177578723E070-32925
chr5177578833177578896E070-32752
chr5177634826177634972E07023178
chr5177635074177635315E07023426
chr5177637079177637188E07025431
chr5177657023177657131E07045375
chr5177657264177657318E07045616
chr5177657405177657459E07045757
chr5177657660177657762E07046012
chr5177576659177576847E071-34801
chr5177576911177576991E071-34657
chr5177577013177577087E071-34561
chr5177579529177579619E071-32029
chr5177633799177634006E07122151
chr5177634057177634818E07122409
chr5177640320177640394E07128672
chr5177640479177640559E07128831
chr5177656761177656845E07145113
chr5177656884177656946E07145236
chr5177657023177657131E07145375
chr5177657264177657318E07145616
chr5177657405177657459E07145757
chr5177657660177657762E07146012
chr5177579529177579619E072-32029
chr5177657023177657131E07245375
chr5177657264177657318E07245616
chr5177657405177657459E07245757
chr5177657660177657762E07246012
chr5177570584177570645E073-41003
chr5177570686177570797E073-40851
chr5177570931177571213E073-40435
chr5177578395177578494E073-33154
chr5177578551177578723E073-32925
chr5177578833177578896E073-32752
chr5177579529177579619E073-32029
chr5177633799177634006E07322151
chr5177634057177634818E07322409
chr5177634826177634972E07323178
chr5177635074177635315E07323426
chr5177635362177635454E07323714
chr5177635660177635854E07324012
chr5177657405177657459E07345757
chr5177657660177657762E07346012
chr5177578833177578896E074-32752
chr5177579529177579619E074-32029
chr5177581683177581747E074-29901
chr5177633799177634006E07422151
chr5177634057177634818E07422409
chr5177634826177634972E07423178
chr5177635074177635315E07423426
chr5177657023177657131E07445375
chr5177657264177657318E07445616
chr5177657405177657459E07445757
chr5177657660177657762E07446012
chr5177660594177660644E07448946
chr5177633799177634006E08122151
chr5177634057177634818E08122409
chr5177645989177646080E08134341
chr5177657023177657131E08145375
chr5177657264177657318E08145616
chr5177657405177657459E08145757
chr5177657660177657762E08146012
chr5177581683177581747E082-29901
chr5177634826177634972E08223178
chr5177635074177635315E08223426
chr5177657405177657459E08245757
chr5177657660177657762E08246012










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr5177580272177580431E067-31217
chr5177580579177581256E067-30392
chr5177581258177581342E067-30306
chr5177630843177632916E06719195
chr5177658763177660458E06747115
chr5177580272177580431E068-31217
chr5177580579177581256E068-30392
chr5177581258177581342E068-30306
chr5177630843177632916E06819195
chr5177658763177660458E06847115
chr5177580272177580431E069-31217
chr5177580579177581256E069-30392
chr5177581258177581342E069-30306
chr5177630843177632916E06919195
chr5177658763177660458E06947115
chr5177580272177580431E070-31217
chr5177580579177581256E070-30392
chr5177581258177581342E070-30306
chr5177630843177632916E07019195
chr5177658763177660458E07047115
chr5177580272177580431E071-31217
chr5177580579177581256E071-30392
chr5177581258177581342E071-30306
chr5177630843177632916E07119195
chr5177658763177660458E07147115
chr5177580272177580431E072-31217
chr5177580579177581256E072-30392
chr5177581258177581342E072-30306
chr5177630843177632916E07219195
chr5177658763177660458E07247115
chr5177580272177580431E073-31217
chr5177580579177581256E073-30392
chr5177581258177581342E073-30306
chr5177630843177632916E07319195
chr5177658763177660458E07347115
chr5177580272177580431E074-31217
chr5177580579177581256E074-30392
chr5177581258177581342E074-30306
chr5177630843177632916E07419195
chr5177658763177660458E07447115
chr5177580272177580431E081-31217
chr5177580579177581256E081-30392
chr5177580272177580431E082-31217
chr5177580579177581256E082-30392
chr5177581258177581342E082-30306
chr5177630843177632916E08219195
chr5177658763177660458E08247115