rs933769

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
C==0152 (4563/29958,GnomAD)
C==0149 (4341/29118,TOPMED)
C==0231 (1157/5008,1000G)
C==0184 (708/3854,ALSPAC)
C==0191 (709/3708,TWINSUK)
chr15:95509513 (GRCh38.p7) (15q26.2)
AD
GWASdb2 | GWASCatalog
1   publication(s)
See rs on genome
12 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 15NC_000015.10:g.95509513C>T
GRCh37.p13 chr 15NC_000015.9:g.96052742C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.091T=0.909
1000GenomesAmericanSub694C=0.200T=0.800
1000GenomesEast AsianSub1008C=0.350T=0.650
1000GenomesEuropeSub1006C=0.185T=0.815
1000GenomesGlobalStudy-wide5008C=0.231T=0.769
1000GenomesSouth AsianSub978C=0.370T=0.630
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.184T=0.816
The Genome Aggregation DatabaseAfricanSub8726C=0.076T=0.924
The Genome Aggregation DatabaseAmericanSub836C=0.210T=0.790
The Genome Aggregation DatabaseEast AsianSub1610C=0.320T=0.680
The Genome Aggregation DatabaseEuropeSub18486C=0.170T=0.829
The Genome Aggregation DatabaseGlobalStudy-wide29958C=0.152T=0.847
The Genome Aggregation DatabaseOtherSub300C=0.190T=0.810
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.149T=0.850
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.191T=0.809
PMID Title Author Journal
21529783A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.Heath ACBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs9337690.000007alcoholism (alcohol dependence factor score)21529783
rs9337697.00E-06alcohol dependence21529783

eQTL of rs933769 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs933769 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr159600717096007385E070-45357
chr159603736496037410E070-15332
chr159603751696037635E070-15107
chr159603769596037768E070-14974
chr159604055996040633E070-12109
chr159604068596040833E070-11909
chr159608312596083165E07030383
chr159603751696037635E081-15107
chr159603769596037768E081-14974
chr159603792696038674E081-14068
chr159603751696037635E082-15107
chr159603769596037768E082-14974