rs9348260

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
G==0342 (10252/29944,GnomAD)
G==0396 (11541/29118,TOPMED)
G==0357 (1789/5008,1000G)
G==0301 (1159/3854,ALSPAC)
G==0311 (1154/3708,TWINSUK)
chr6:170200899 (GRCh38.p7) (6q27)
AD
GWASdb2
1   publication(s)
See rs on genome
290 Enhancers around
36 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.170200899G>A
GRCh37.p13 chr 6NC_000006.11:g.170516123G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.561A=0.439
1000GenomesAmericanSub694G=0.340A=0.660
1000GenomesEast AsianSub1008G=0.240A=0.760
1000GenomesEuropeSub1006G=0.312A=0.688
1000GenomesGlobalStudy-wide5008G=0.357A=0.643
1000GenomesSouth AsianSub978G=0.260A=0.740
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.301A=0.699
The Genome Aggregation DatabaseAfricanSub8714G=0.518A=0.482
The Genome Aggregation DatabaseAmericanSub838G=0.270A=0.730
The Genome Aggregation DatabaseEast AsianSub1612G=0.251A=0.749
The Genome Aggregation DatabaseEuropeSub18478G=0.271A=0.729
The Genome Aggregation DatabaseGlobalStudy-wide29944G=0.342A=0.657
The Genome Aggregation DatabaseOtherSub302G=0.330A=0.670
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.396A=0.603
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.311A=0.689
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs93482600.000711alcohol dependence20201924

eQTL of rs9348260 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9348260 in Fetal Brain

Probe ID Position Gene beta p-value
cg22739554chr6:170500876-0.0598684387574312.1807e-20

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr6170466794170467034E067-49089
chr6170467047170467128E067-48995
chr6170467149170467427E067-48696
chr6170467428170468735E067-47388
chr6170468900170468976E067-47147
chr6170468977170469038E067-47085
chr6170539956170540252E06723833
chr6170540255170540426E06724132
chr6170540432170540575E06724309
chr6170540585170540855E06724462
chr6170540865170540922E06724742
chr6170541003170541159E06724880
chr6170541574170542191E06725451
chr6170542525170542690E06726402
chr6170542742170542786E06726619
chr6170543096170543370E06726973
chr6170552388170552528E06736265
chr6170552633170552805E06736510
chr6170552841170553647E06736718
chr6170556821170556901E06740698
chr6170466580170466753E068-49370
chr6170479449170479499E068-36624
chr6170537166170537314E06821043
chr6170537394170537461E06821271
chr6170537507170537685E06821384
chr6170537700170538163E06821577
chr6170539956170540252E06823833
chr6170540255170540426E06824132
chr6170540432170540575E06824309
chr6170540585170540855E06824462
chr6170540865170540922E06824742
chr6170541003170541159E06824880
chr6170541222170541352E06825099
chr6170541364170541516E06825241
chr6170541574170542191E06825451
chr6170542525170542690E06826402
chr6170542742170542786E06826619
chr6170553735170554234E06837612
chr6170466580170466753E069-49370
chr6170466794170467034E069-49089
chr6170467047170467128E069-48995
chr6170467149170467427E069-48696
chr6170467428170468735E069-47388
chr6170468900170468976E069-47147
chr6170468977170469038E069-47085
chr6170488856170488911E069-27212
chr6170488923170489007E069-27116
chr6170489080170489165E069-26958
chr6170498146170498206E069-17917
chr6170498215170498288E069-17835
chr6170498293170498353E069-17770
chr6170539956170540252E06923833
chr6170540255170540426E06924132
chr6170540432170540575E06924309
chr6170540585170540855E06924462
chr6170540865170540922E06924742
chr6170541003170541159E06924880
chr6170541222170541352E06925099
chr6170541364170541516E06925241
chr6170541574170542191E06925451
chr6170542525170542690E06926402
chr6170542742170542786E06926619
chr6170552388170552528E06936265
chr6170552633170552805E06936510
chr6170553735170554234E06937612
chr6170554273170554401E06938150
chr6170554413170554522E06938290
chr6170556821170556901E06940698
chr6170557173170557683E06941050
chr6170467428170468735E070-47388
chr6170493801170494005E070-22118
chr6170494034170494741E070-21382
chr6170533178170533296E07017055
chr6170540865170540922E07024742
chr6170541003170541159E07024880
chr6170541222170541352E07025099
chr6170541574170542191E07025451
chr6170544812170545220E07028689
chr6170545256170545447E07029133
chr6170552388170552528E07036265
chr6170553735170554234E07037612
chr6170466794170467034E071-49089
chr6170467047170467128E071-48995
chr6170468900170468976E071-47147
chr6170468977170469038E071-47085
chr6170488856170488911E071-27212
chr6170488923170489007E071-27116
chr6170489080170489165E071-26958
chr6170489386170489605E071-26518
chr6170489654170489832E071-26291
chr6170489929170489979E071-26144
chr6170490097170490147E071-25976
chr6170490155170490215E071-25908
chr6170491303170491695E071-24428
chr6170491707170492449E071-23674
chr6170537394170537461E07121271
chr6170537507170537685E07121384
chr6170539956170540252E07123833
chr6170540255170540426E07124132
chr6170540432170540575E07124309
chr6170540585170540855E07124462
chr6170540865170540922E07124742
chr6170541003170541159E07124880
chr6170541222170541352E07125099
chr6170541364170541516E07125241
chr6170541574170542191E07125451
chr6170542525170542690E07126402
chr6170542742170542786E07126619
chr6170543096170543370E07126973
chr6170543378170543485E07127255
chr6170543515170543591E07127392
chr6170553735170554234E07137612
chr6170554273170554401E07138150
chr6170554413170554522E07138290
chr6170554600170554673E07138477
chr6170554686170554879E07138563
chr6170554924170555065E07138801
chr6170555113170555153E07138990
chr6170555189170555264E07139066
chr6170556668170556718E07140545
chr6170556821170556901E07140698
chr6170557173170557683E07141050
chr6170557944170558046E07141821
chr6170466580170466753E072-49370
chr6170466794170467034E072-49089
chr6170467047170467128E072-48995
chr6170467149170467427E072-48696
chr6170467428170468735E072-47388
chr6170488923170489007E072-27116
chr6170489080170489165E072-26958
chr6170489386170489605E072-26518
chr6170489654170489832E072-26291
chr6170489929170489979E072-26144
chr6170490097170490147E072-25976
chr6170490155170490215E072-25908
chr6170490256170490349E072-25774
chr6170491707170492449E072-23674
chr6170537394170537461E07221271
chr6170537507170537685E07221384
chr6170537700170538163E07221577
chr6170539956170540252E07223833
chr6170540255170540426E07224132
chr6170540432170540575E07224309
chr6170540585170540855E07224462
chr6170540865170540922E07224742
chr6170541003170541159E07224880
chr6170541222170541352E07225099
chr6170541364170541516E07225241
chr6170541574170542191E07225451
chr6170542525170542690E07226402
chr6170542742170542786E07226619
chr6170543096170543370E07226973
chr6170543378170543485E07227255
chr6170543515170543591E07227392
chr6170552388170552528E07236265
chr6170552841170553647E07236718
chr6170553735170554234E07237612
chr6170554273170554401E07238150
chr6170554413170554522E07238290
chr6170554600170554673E07238477
chr6170554686170554879E07238563
chr6170556668170556718E07240545
chr6170556821170556901E07240698
chr6170468900170468976E073-47147
chr6170468977170469038E073-47085
chr6170480532170480616E073-35507
chr6170480706170480794E073-35329
chr6170480824170481126E073-34997
chr6170481296170481442E073-34681
chr6170489386170489605E073-26518
chr6170489654170489832E073-26291
chr6170489929170489979E073-26144
chr6170493801170494005E073-22118
chr6170494034170494741E073-21382
chr6170503858170503963E073-12160
chr6170537166170537314E07321043
chr6170537394170537461E07321271
chr6170537507170537685E07321384
chr6170537700170538163E07321577
chr6170540865170540922E07324742
chr6170541574170542191E07325451
chr6170542525170542690E07326402
chr6170542742170542786E07326619
chr6170467149170467427E074-48696
chr6170467428170468735E074-47388
chr6170489654170489832E074-26291
chr6170489929170489979E074-26144
chr6170490097170490147E074-25976
chr6170490155170490215E074-25908
chr6170541364170541516E07425241
chr6170541574170542191E07425451
chr6170542525170542690E07426402
chr6170542742170542786E07426619
chr6170543096170543370E07426973
chr6170552388170552528E07436265
chr6170552633170552805E07436510
chr6170553735170554234E07437612
chr6170467428170468735E081-47388
chr6170489654170489832E081-26291
chr6170489929170489979E081-26144
chr6170490097170490147E081-25976
chr6170490155170490215E081-25908
chr6170493332170493703E081-22420
chr6170493801170494005E081-22118
chr6170494034170494741E081-21382
chr6170494969170495168E081-20955
chr6170495470170495558E081-20565
chr6170495594170495733E081-20390
chr6170521563170521658E0815440
chr6170521668170521822E0815545
chr6170521886170521971E0815763
chr6170531798170532074E08115675
chr6170532079170532119E08115956
chr6170532130170532208E08116007
chr6170532365170532522E08116242
chr6170532549170533128E08116426
chr6170533178170533296E08117055
chr6170533548170533598E08117425
chr6170533794170533854E08117671
chr6170534191170536490E08118068
chr6170536750170536805E08120627
chr6170537166170537314E08121043
chr6170537394170537461E08121271
chr6170537507170537685E08121384
chr6170537700170538163E08121577
chr6170538176170538550E08122053
chr6170539956170540252E08123833
chr6170540255170540426E08124132
chr6170540432170540575E08124309
chr6170540585170540855E08124462
chr6170540865170540922E08124742
chr6170541003170541159E08124880
chr6170541222170541352E08125099
chr6170541364170541516E08125241
chr6170541574170542191E08125451
chr6170542525170542690E08126402
chr6170542742170542786E08126619
chr6170543096170543370E08126973
chr6170543378170543485E08127255
chr6170543515170543591E08127392
chr6170544812170545220E08128689
chr6170545256170545447E08129133
chr6170545653170545733E08129530
chr6170545906170545969E08129783
chr6170552388170552528E08136265
chr6170552633170552805E08136510
chr6170552841170553647E08136718
chr6170553735170554234E08137612
chr6170467428170468735E082-47388
chr6170490097170490147E082-25976
chr6170490155170490215E082-25908
chr6170490256170490349E082-25774
chr6170490424170490464E082-25659
chr6170490554170490654E082-25469
chr6170493124170493313E082-22810
chr6170493332170493703E082-22420
chr6170493801170494005E082-22118
chr6170494034170494741E082-21382
chr6170494969170495168E082-20955
chr6170495470170495558E082-20565
chr6170495594170495733E082-20390
chr6170533178170533296E08217055
chr6170534191170536490E08218068
chr6170536750170536805E08220627
chr6170537166170537314E08221043
chr6170537394170537461E08221271
chr6170537507170537685E08221384
chr6170537700170538163E08221577
chr6170538176170538550E08222053
chr6170539956170540252E08223833
chr6170540255170540426E08224132
chr6170540432170540575E08224309
chr6170540585170540855E08224462
chr6170540865170540922E08224742
chr6170541003170541159E08224880
chr6170541222170541352E08225099
chr6170541364170541516E08225241
chr6170541574170542191E08225451
chr6170542525170542690E08226402
chr6170542742170542786E08226619
chr6170543096170543370E08226973
chr6170543378170543485E08227255
chr6170543515170543591E08227392
chr6170544812170545220E08228689
chr6170545256170545447E08229133
chr6170545653170545733E08229530
chr6170545906170545969E08229783
chr6170546215170546366E08230092
chr6170546372170546482E08230249
chr6170552388170552528E08236265










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr6170483311170483403E067-32720
chr6170543673170543750E06727550
chr6170543791170543841E06727668
chr6170543990170544059E06727867
chr6170544202170544374E06728079
chr6170483311170483403E068-32720
chr6170543673170543750E06827550
chr6170543791170543841E06827668
chr6170543990170544059E06827867
chr6170544202170544374E06828079
chr6170543673170543750E06927550
chr6170543791170543841E06927668
chr6170543990170544059E06927867
chr6170544202170544374E06928079
chr6170483311170483403E071-32720
chr6170543673170543750E07127550
chr6170543791170543841E07127668
chr6170543990170544059E07127867
chr6170544202170544374E07128079
chr6170482986170483073E072-33050
chr6170483311170483403E072-32720
chr6170543673170543750E07227550
chr6170543791170543841E07227668
chr6170543990170544059E07227867
chr6170544202170544374E07228079
chr6170482986170483073E073-33050
chr6170483311170483403E073-32720
chr6170543673170543750E07327550
chr6170543791170543841E07327668
chr6170543990170544059E07327867
chr6170544202170544374E07328079
chr6170483311170483403E074-32720
chr6170543673170543750E07427550
chr6170543791170543841E07427668
chr6170543990170544059E07427867
chr6170544202170544374E07428079