rs9352704

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0329 (9865/29902,GnomAD)
C=0307 (8939/29118,TOPMED)
C=0269 (1345/5008,1000G)
C=0378 (1457/3854,ALSPAC)
C=0375 (1390/3708,TWINSUK)
chr6:79200601 (GRCh38.p7) (6q14.1)
AD
GWASdb2
1   publication(s)
See rs on genome
79 Enhancers around
18 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.79200601T>C
GRCh37.p13 chr 6NC_000006.11:g.79910318T>C
HMGN3 RefSeqGeneNG_029598.1:g.39138A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.744C=0.256
1000GenomesAmericanSub694T=0.800C=0.200
1000GenomesEast AsianSub1008T=0.803C=0.197
1000GenomesEuropeSub1006T=0.660C=0.340
1000GenomesGlobalStudy-wide5008T=0.731C=0.269
1000GenomesSouth AsianSub978T=0.660C=0.340
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.622C=0.378
The Genome Aggregation DatabaseAfricanSub8716T=0.717C=0.283
The Genome Aggregation DatabaseAmericanSub834T=0.820C=0.180
The Genome Aggregation DatabaseEast AsianSub1618T=0.818C=0.182
The Genome Aggregation DatabaseEuropeSub18432T=0.627C=0.372
The Genome Aggregation DatabaseGlobalStudy-wide29902T=0.670C=0.329
The Genome Aggregation DatabaseOtherSub302T=0.710C=0.290
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.693C=0.307
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.625C=0.375
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs93527040.000996alcohol dependence21314694

eQTL of rs9352704 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9352704 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr67992431879924410E06714000
chr67992490579925241E06714587
chr67992529679925371E06714978
chr67992568079925732E06715362
chr67992574379925834E06715425
chr67994190079941950E06731582
chr67994215779942264E06731839
chr67989874979898954E068-11364
chr67989897279899116E068-11202
chr67989912479899297E068-11021
chr67989970679899969E068-10349
chr67992431879924410E06814000
chr67992490579925241E06814587
chr67992529679925371E06814978
chr67992568079925732E06815362
chr67994215779942264E06831839
chr67995904479959152E06848726
chr67995962179959722E06849303
chr67995993579960046E06849617
chr67996006979960166E06849751
chr67986171579862517E069-47801
chr67992689679926973E06916578
chr67992699179927041E06916673
chr67992744479927621E06917126
chr67994094579941042E06930627
chr67994113679941203E06930818
chr67994140279941458E06931084
chr67994157479941715E06931256
chr67994190079941950E06931582
chr67994215779942264E06931839
chr67995962179959722E06949303
chr67995993579960046E06949617
chr67994215779942264E07031839
chr67986171579862517E071-47801
chr67992490579925241E07114587
chr67992529679925371E07114978
chr67992744479927621E07117126
chr67994094579941042E07130627
chr67994113679941203E07130818
chr67994140279941458E07131084
chr67994157479941715E07131256
chr67994190079941950E07131582
chr67994215779942264E07131839
chr67995904479959152E07148726
chr67995962179959722E07149303
chr67995993579960046E07149617
chr67996006979960166E07149751
chr67992490579925241E07214587
chr67992529679925371E07214978
chr67992568079925732E07215362
chr67992574379925834E07215425
chr67994094579941042E07230627
chr67994113679941203E07230818
chr67994140279941458E07231084
chr67994157479941715E07231256
chr67994190079941950E07231582
chr67994215779942264E07231839
chr67995904479959152E07248726
chr67995962179959722E07249303
chr67995993579960046E07249617
chr67986171579862517E073-47801
chr67994215779942264E07331839
chr67986171579862517E074-47801
chr67991098579911046E074667
chr67994215779942264E07431839
chr67995904479959152E07448726
chr67995962179959722E07449303
chr67995993579960046E07449617
chr67996006979960166E07449751
chr67989874979898954E081-11364
chr67989897279899116E081-11202
chr67989912479899297E081-11021
chr67994215779942264E08131839
chr67989874979898954E082-11364
chr67989897279899116E082-11202
chr67989912479899297E082-11021
chr67994094579941042E08230627
chr67994113679941203E08230818
chr67994190079941950E08231582










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr67994286279943013E06732544
chr67994310579944931E06732787
chr67994286279943013E06832544
chr67994310579944931E06832787
chr67994286279943013E06932544
chr67994310579944931E06932787
chr67994286279943013E07032544
chr67994310579944931E07032787
chr67994286279943013E07132544
chr67994310579944931E07132787
chr67994286279943013E07232544
chr67994310579944931E07232787
chr67994286279943013E07332544
chr67994310579944931E07332787
chr67994286279943013E07432544
chr67994310579944931E07432787
chr67994286279943013E08232544
chr67994310579944931E08232787