rs9352760

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0177 (5285/29822,GnomAD)
A=0184 (5376/29118,TOPMED)
A=0176 (883/5008,1000G)
A=0184 (709/3854,ALSPAC)
A=0181 (670/3708,TWINSUK)
chr6:79732196 (GRCh38.p7) (6q14.1)
AD
GWASdb2
1   publication(s)
See rs on genome
31 Enhancers around
18 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.79732196G>A
GRCh37.p13 chr 6NC_000006.11:g.80441913G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.796A=0.204
1000GenomesAmericanSub694G=0.690A=0.310
1000GenomesEast AsianSub1008G=0.901A=0.099
1000GenomesEuropeSub1006G=0.811A=0.189
1000GenomesGlobalStudy-wide5008G=0.824A=0.176
1000GenomesSouth AsianSub978G=0.890A=0.110
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.816A=0.184
The Genome Aggregation DatabaseAfricanSub8700G=0.806A=0.194
The Genome Aggregation DatabaseAmericanSub826G=0.750A=0.250
The Genome Aggregation DatabaseEast AsianSub1616G=0.908A=0.092
The Genome Aggregation DatabaseEuropeSub18378G=0.825A=0.174
The Genome Aggregation DatabaseGlobalStudy-wide29822G=0.822A=0.177
The Genome Aggregation DatabaseOtherSub302G=0.900A=0.100
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.815A=0.184
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.819A=0.181
PMID Title Author Journal
24277619ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.Quillen EEAm J Med Genet B Neuropsychiatr Genet

P-Value

SNP ID p-value Traits Study
rs93527600.000226alcohol dependence24277619

eQTL of rs9352760 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9352760 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr68039707980397149E067-44764
chr68039724780397297E067-44616
chr68039751280397970E067-43943
chr68042145080421527E067-20386
chr68039707980397149E068-44764
chr68039724780397297E068-44616
chr68039751280397970E068-43943
chr68044661480446707E0684701
chr68039724780397297E069-44616
chr68039751280397970E069-43943
chr68042145080421527E069-20386
chr68042403480424128E069-17785
chr68043452980435041E069-6872
chr68039655880396931E071-44982
chr68039707980397149E071-44764
chr68039724780397297E071-44616
chr68039751280397970E071-43943
chr68042145080421527E071-20386
chr68044661480446707E0714701
chr68039655880396931E072-44982
chr68041987580419964E072-21949
chr68041998080420042E072-21871
chr68042008280420163E072-21750
chr68044661480446707E0724701
chr68039655880396931E073-44982
chr68039751280397970E073-43943
chr68044661480446707E0744701
chr68041252280412576E081-29337
chr68041265380412812E081-29101
chr68042145080421527E082-20386
chr68044661480446707E0824701









Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr68044693680447366E0675023
chr68048753280488268E06745619
chr68044693680447366E0685023
chr68048753280488268E06845619
chr68044693680447366E0695023
chr68048753280488268E06945619
chr68048753280488268E07045619
chr68044693680447366E0715023
chr68048753280488268E07145619
chr68044693680447366E0725023
chr68048753280488268E07245619
chr68044693680447366E0735023
chr68048753280488268E07345619
chr68044693680447366E0745023
chr68048753280488268E07445619
chr68048753280488268E08145619
chr68044693680447366E0825023
chr68048753280488268E08245619