SNP Detail Info-rs9352817

Molecule type	Change	Amino acid[Codon]	SO Term
BCKDHB transcript variant 2	NM_000056.4:c.	N/A	Intron Variant
BCKDHB transcript variant 3	NM_001318975.1:c.	N/A	Intron Variant
BCKDHB transcript variant 1	NM_183050.3:c.	N/A	Intron Variant
BCKDHB transcript variant 4	NR_134945.1:n.	N/A	Intron Variant
BCKDHB transcript variant X7	XM_011536024.2:c.	N/A	Intron Variant
BCKDHB transcript variant X9	XM_011536026.2:c.	N/A	Intron Variant
BCKDHB transcript variant X2	XM_005248756.4:c.	N/A	Genic Downstream Transcript Variant
BCKDHB transcript variant X5	XM_011536023.2:c.	N/A	Genic Downstream Transcript Variant
BCKDHB transcript variant X8	XM_011536025.2:c.	N/A	Genic Downstream Transcript Variant
BCKDHB transcript variant X1	XR_001743546.1:n.	N/A	Intron Variant
BCKDHB transcript variant X3	XR_001743547.1:n.	N/A	Intron Variant
BCKDHB transcript variant X4	XR_001743548.1:n.	N/A	Intron Variant
BCKDHB transcript variant X6	XR_001743549.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.788	G=0.212
1000Genomes	American	Sub	694	T=0.370	G=0.630
1000Genomes	East Asian	Sub	1008	T=0.447	G=0.553
1000Genomes	Europe	Sub	1006	T=0.532	G=0.468
1000Genomes	Global	Study-wide	5008	T=0.570	G=0.430
1000Genomes	South Asian	Sub	978	T=0.580	G=0.420
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.537	G=0.463
The Genome Aggregation Database	African	Sub	8708	T=0.757	G=0.243
The Genome Aggregation Database	American	Sub	838	T=0.370	G=0.630
The Genome Aggregation Database	East Asian	Sub	1606	T=0.435	G=0.565
The Genome Aggregation Database	Europe	Sub	18466	T=0.552	G=0.447
The Genome Aggregation Database	Global	Study-wide	29920	T=0.600	G=0.399
The Genome Aggregation Database	Other	Sub	302	T=0.490	G=0.510
Trans-Omics for Precision Medicine	Global	Study-wide	29118	T=0.626	G=0.373
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.552	G=0.448

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs9352817	0.000082	alcohol dependence	20201924
rs9352817	0.0000823	alcoholism	pha002893
rs9352817	0.000089	alcohol dependence(early age of onset)	20201924
rs9352817	0.0000891	alcoholism	pha002892

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr6	80978330	80978551	E067	-47328
chr6	80978966	80979066	E067	-46813
chr6	80977692	80977816	E068	-48063
chr6	81026286	81026914	E068	407
chr6	81041288	81041615	E068	15409
chr6	81041839	81042016	E068	15960
chr6	81065763	81065968	E068	39884
chr6	81071372	81071603	E069	45493
chr6	81041288	81041615	E070	15409
chr6	81041839	81042016	E070	15960
chr6	81043216	81043309	E070	17337
chr6	81026286	81026914	E071	407
chr6	81039303	81039529	E071	13424
chr6	81039535	81039699	E071	13656
chr6	81045264	81045477	E071	19385
chr6	81026286	81026914	E072	407
chr6	81038487	81038594	E072	12608
chr6	80978330	80978551	E074	-47328
chr6	81039303	81039529	E074	13424
chr6	81039535	81039699	E074	13656
chr6	80986310	80986364	E082	-39515
chr6	80986677	80986794	E082	-39085
chr6	81041288	81041615	E082	15409
chr6	81041839	81042016	E082	15960
chr6	81043216	81043309	E082	17337
chr6	81044101	81044184	E082	18222
chr6	81044259	81044498	E082	18380

rs9352817