rs9360055

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0143 (4301/29906,GnomAD)
A=0096 (2813/29118,TOPMED)
A=0152 (761/5008,1000G)
A=0189 (729/3854,ALSPAC)
A=0171 (635/3708,TWINSUK)
chr6:94230551 (GRCh38.p7) (6q16.1)
ND
GWASdb2
1   publication(s)
See rs on genome
16 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.94230551G>A
GRCh37.p13 chr 6NC_000006.11:g.94940269G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.989A=0.011
1000GenomesAmericanSub694G=0.870A=0.130
1000GenomesEast AsianSub1008G=0.704A=0.296
1000GenomesEuropeSub1006G=0.826A=0.174
1000GenomesGlobalStudy-wide5008G=0.848A=0.152
1000GenomesSouth AsianSub978G=0.810A=0.190
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.811A=0.189
The Genome Aggregation DatabaseAfricanSub8724G=0.968A=0.032
The Genome Aggregation DatabaseAmericanSub830G=0.880A=0.120
The Genome Aggregation DatabaseEast AsianSub1606G=0.664A=0.336
The Genome Aggregation DatabaseEuropeSub18444G=0.818A=0.181
The Genome Aggregation DatabaseGlobalStudy-wide29906G=0.856A=0.143
The Genome Aggregation DatabaseOtherSub302G=0.890A=0.110
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.903A=0.096
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.829A=0.171
PMID Title Author Journal
20158304A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.Lind PATwin Res Hum Genet

P-Value

SNP ID p-value Traits Study
rs93600551.26E-05alcohol and nictotine co-dependence20158304

eQTL of rs9360055 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9360055 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr69497969694979822E06939427
chr69497987594980059E06939606
chr69498010594980219E06939836
chr69497969694979822E07139427
chr69497987594980059E07139606
chr69498010594980219E07139836
chr69498025994980370E07139990
chr69498010594980219E07239836
chr69498025994980370E07239990
chr69497969694979822E07439427
chr69497987594980059E07439606
chr69498010594980219E07439836
chr69498010594980219E08139836
chr69498025994980370E08139990
chr69490655494906899E082-33370
chr69490695394907003E082-33266