SNP Detail Info-rs936498

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

LOC105377862 : Non Coding Transcript Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0266 (7964/29940,GnomAD)
G==0309 (9008/29118,TOPMED)
G==0342 (1714/5008,1000G)
G==0160 (617/3854,ALSPAC)
G==0157 (584/3708,TWINSUK)

Position: chr6:76820190 (GRCh38.p7) (6q14.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 6	NC_000006.12:g.76820190G>A
GRCh37.p13 chr 6	NC_000006.11:g.77529907G>A

Molecule type	Change	Amino acid[Codon]	SO Term
LOC105377862 transcript variant X5	XR_942703.2:n.149...XR_942703.2:n.14938G>A	G>A	Non Coding Transcript Variant
LOC105377862 transcript variant X1	XR_001744208.1:n.	N/A	Intron Variant
LOC105377862 transcript variant X2	XR_001744209.1:n.	N/A	Intron Variant
LOC105377862 transcript variant X3	XR_942699.2:n.	N/A	Intron Variant
LOC105377862 transcript variant X5	XR_942701.2:n.	N/A	Intron Variant
LOC105377862 transcript variant X6	XR_942704.2:n.	N/A	Genic Downstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.543	A=0.457
1000Genomes	American	Sub	694	G=0.440	A=0.560
1000Genomes	East Asian	Sub	1008	G=0.325	A=0.675
1000Genomes	Europe	Sub	1006	G=0.177	A=0.823
1000Genomes	Global	Study-wide	5008	G=0.342	A=0.658
1000Genomes	South Asian	Sub	978	G=0.190	A=0.810
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.160	A=0.840
The Genome Aggregation Database	African	Sub	8716	G=0.490	A=0.510
The Genome Aggregation Database	American	Sub	834	G=0.430	A=0.570
The Genome Aggregation Database	East Asian	Sub	1612	G=0.316	A=0.684
The Genome Aggregation Database	Europe	Sub	18476	G=0.151	A=0.848
The Genome Aggregation Database	Global	Study-wide	29940	G=0.266	A=0.734
The Genome Aggregation Database	Other	Sub	302	G=0.080	A=0.920
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.309	A=0.690
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.157	A=0.843

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs936498	0.000246	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs936498