rs9366751

Homo sapiens
A>G
NEDD9 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G=0144 (4320/29970,GnomAD)
G=0157 (4589/29118,TOPMED)
G=0120 (600/5008,1000G)
G=0156 (602/3854,ALSPAC)
G=0142 (527/3708,TWINSUK)
chr6:11229264 (GRCh38.p7) (6p24.2)
AD
GWASdb2
1   publication(s)
See rs on genome
240 Enhancers around
49 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.11229264A>G
GRCh37.p13 chr 6NC_000006.11:g.11229497A>G

Gene: NEDD9, neural precursor cell expressed, developmentally down-regulated 9(minus strand)

Molecule type Change Amino acid[Codon] SO Term
NEDD9 transcript variant 3NM_001142393.1:c.N/AIntron Variant
NEDD9 transcript variant 4NM_001271033.1:c.N/AIntron Variant
NEDD9 transcript variant 1NM_006403.3:c.N/AIntron Variant
NEDD9 transcript variant 2NM_182966.3:c.N/AIntron Variant
NEDD9 transcript variant 5NR_073131.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.870G=0.130
1000GenomesAmericanSub694A=0.870G=0.130
1000GenomesEast AsianSub1008A=0.927G=0.073
1000GenomesEuropeSub1006A=0.866G=0.134
1000GenomesGlobalStudy-wide5008A=0.880G=0.120
1000GenomesSouth AsianSub978A=0.870G=0.130
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.844G=0.156
The Genome Aggregation DatabaseAfricanSub8720A=0.846G=0.154
The Genome Aggregation DatabaseAmericanSub836A=0.910G=0.090
The Genome Aggregation DatabaseEast AsianSub1620A=0.951G=0.049
The Genome Aggregation DatabaseEuropeSub18492A=0.850G=0.150
The Genome Aggregation DatabaseGlobalStudy-wide29970A=0.855G=0.144
The Genome Aggregation DatabaseOtherSub302A=0.850G=0.150
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.842G=0.157
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.858G=0.142
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs93667519.31E-05alcohol dependence21314694

eQTL of rs9366751 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9366751 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr61120245511202657E067-26840
chr61120265811204093E067-25404
chr61121110211211542E067-17955
chr61121155711211761E067-17736
chr61121182211211992E067-17505
chr61121247511212614E067-16883
chr61121284511213458E067-16039
chr61121372511213863E067-15634
chr61121389811215191E067-14306
chr61121521711215480E067-14017
chr61121745111218178E067-11319
chr61121818711218277E067-11220
chr61121896911219627E067-9870
chr61121964511220092E067-9405
chr61125156811251685E06722071
chr61126355111264079E06734054
chr61120138611201454E068-28043
chr61120206511202319E068-27178
chr61120245511202657E068-26840
chr61120437311204458E068-25039
chr61120509911205180E068-24317
chr61120530211205384E068-24113
chr61120539711205457E068-24040
chr61120806411208196E068-21301
chr61121074411210856E068-18641
chr61121089511210983E068-18514
chr61121110211211542E068-17955
chr61121247511212614E068-16883
chr61121284511213458E068-16039
chr61121372511213863E068-15634
chr61121389811215191E068-14306
chr61121558611215669E068-13828
chr61121602011216313E068-13184
chr61121643211216495E068-13002
chr61121696011217010E068-12487
chr61121717411217283E068-12214
chr61121737411217432E068-12065
chr61121745111218178E068-11319
chr61121818711218277E068-11220
chr61121829811218721E068-10776
chr61121872211218963E068-10534
chr61121964511220092E068-9405
chr61122019611220246E068-9251
chr61122026211220359E068-9138
chr61122243011222837E068-6660
chr61122290111223081E068-6416
chr61122458511225235E068-4262
chr61122539411225498E068-3999
chr61122554111225696E068-3801
chr61122606911226179E068-3318
chr61122632811226560E068-2937
chr61122660411226658E068-2839
chr61124175711242495E06812260
chr61125139011251440E06821893
chr61126228811263032E06832791
chr61120206511202319E069-27178
chr61120245511202657E069-26840
chr61120265811204093E069-25404
chr61121110211211542E069-17955
chr61121372511213863E069-15634
chr61121389811215191E069-14306
chr61121521711215480E069-14017
chr61121558611215669E069-13828
chr61121602011216313E069-13184
chr61121737411217432E069-12065
chr61121745111218178E069-11319
chr61121818711218277E069-11220
chr61121829811218721E069-10776
chr61121872211218963E069-10534
chr61121896911219627E069-9870
chr61121964511220092E069-9405
chr61122019611220246E069-9251
chr61122026211220359E069-9138
chr61124175711242495E06912260
chr61125139011251440E06921893
chr61125156811251685E06922071
chr61125171711252528E06922220
chr61125254011253392E06923043
chr61120245511202657E070-26840
chr61120265811204093E070-25404
chr61121372511213863E070-15634
chr61121389811215191E070-14306
chr61121521711215480E070-14017
chr61121558611215669E070-13828
chr61122195611222184E070-7313
chr61122243011222837E070-6660
chr61120138611201454E071-28043
chr61120206511202319E071-27178
chr61120245511202657E071-26840
chr61120858011208895E071-20602
chr61121074411210856E071-18641
chr61121089511210983E071-18514
chr61121110211211542E071-17955
chr61121155711211761E071-17736
chr61121182211211992E071-17505
chr61121247511212614E071-16883
chr61121372511213863E071-15634
chr61121389811215191E071-14306
chr61121521711215480E071-14017
chr61121558611215669E071-13828
chr61121602011216313E071-13184
chr61121643211216495E071-13002
chr61121829811218721E071-10776
chr61121872211218963E071-10534
chr61121896911219627E071-9870
chr61121964511220092E071-9405
chr61122243011222837E071-6660
chr61122290111223081E071-6416
chr61122322411223285E071-6212
chr61124175711242495E07112260
chr61125139011251440E07121893
chr61125156811251685E07122071
chr61126355111264079E07134054
chr61121372511213863E072-15634
chr61121389811215191E072-14306
chr61121602011216313E072-13184
chr61121643211216495E072-13002
chr61121896911219627E072-9870
chr61121964511220092E072-9405
chr61124175711242495E07212260
chr61125156811251685E07222071
chr61120245511202657E073-26840
chr61120265811204093E073-25404
chr61121074411210856E073-18641
chr61121089511210983E073-18514
chr61121110211211542E073-17955
chr61121155711211761E073-17736
chr61121182211211992E073-17505
chr61121284511213458E073-16039
chr61121372511213863E073-15634
chr61121389811215191E073-14306
chr61121521711215480E073-14017
chr61121558611215669E073-13828
chr61121602011216313E073-13184
chr61121643211216495E073-13002
chr61121745111218178E073-11319
chr61121818711218277E073-11220
chr61121829811218721E073-10776
chr61121872211218963E073-10534
chr61121896911219627E073-9870
chr61125139011251440E07321893
chr61125156811251685E07322071
chr61125171711252528E07322220
chr61125254011253392E07323043
chr61126355111264079E07334054
chr61120206511202319E074-27178
chr61120245511202657E074-26840
chr61120265811204093E074-25404
chr61121372511213863E074-15634
chr61121389811215191E074-14306
chr61121521711215480E074-14017
chr61121737411217432E074-12065
chr61121745111218178E074-11319
chr61121818711218277E074-11220
chr61121829811218721E074-10776
chr61121872211218963E074-10534
chr61121896911219627E074-9870
chr61122322411223285E074-6212
chr61125139011251440E07421893
chr61125254011253392E07423043
chr61126355111264079E07434054
chr61119432411195641E081-33856
chr61119582211195935E081-33562
chr61119658211198289E081-31208
chr61119869511198939E081-30558
chr61119903311199829E081-29668
chr61120265811204093E081-25404
chr61120437311204458E081-25039
chr61120509911205180E081-24317
chr61120806411208196E081-21301
chr61120858011208895E081-20602
chr61120949511209561E081-19936
chr61120964911210599E081-18898
chr61121074411210856E081-18641
chr61121089511210983E081-18514
chr61121110211211542E081-17955
chr61121155711211761E081-17736
chr61121182211211992E081-17505
chr61121247511212614E081-16883
chr61121284511213458E081-16039
chr61121389811215191E081-14306
chr61121521711215480E081-14017
chr61121558611215669E081-13828
chr61121602011216313E081-13184
chr61121643211216495E081-13002
chr61121696011217010E081-12487
chr61121717411217283E081-12214
chr61121737411217432E081-12065
chr61121745111218178E081-11319
chr61121818711218277E081-11220
chr61121964511220092E081-9405
chr61122019611220246E081-9251
chr61122120011221265E081-8232
chr61122195611222184E081-7313
chr61122243011222837E081-6660
chr61122290111223081E081-6416
chr61122322411223285E081-6212
chr61122359811223875E081-5622
chr61122388011224010E081-5487
chr61122403611224301E081-5196
chr61122458511225235E081-4262
chr61122539411225498E081-3999
chr61122554111225696E081-3801
chr61122606911226179E081-3318
chr61122632811226560E081-2937
chr61122660411226658E081-2839
chr61122884911228976E081-521
chr61123614611236202E0816649
chr61123646811237026E0816971
chr61123719511237419E0817698
chr61123761211237992E0818115
chr61123833111238449E0818834
chr61124175711242495E08112260
chr61125171711252528E08122220
chr61125254011253392E08123043
chr61126011711260277E08130620
chr61126050211260558E08131005
chr61126091911261207E08131422
chr61126228811263032E08132791
chr61126355111264079E08134054
chr61126450911264585E08135012
chr61120964911210599E082-18898
chr61121284511213458E082-16039
chr61121558611215669E082-13828
chr61121737411217432E082-12065
chr61121745111218178E082-11319
chr61121818711218277E082-11220
chr61121896911219627E082-9870
chr61122195611222184E082-7313
chr61122403611224301E082-5196
chr61122632811226560E082-2937
chr61122660411226658E082-2839
chr61123614611236202E0826649
chr61123646811237026E0826971
chr61123719511237419E0827698
chr61123833111238449E0828834
chr61125171711252528E08222220
chr61125254011253392E08223043
chr61126228811263032E08232791
chr61126355111264079E08234054










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr61122930911229791E0670
chr61122994111230271E067444
chr61123051911230646E0671022
chr61123071411231707E0671217
chr61123173711234687E0672240
chr61122930911229791E0680
chr61122994111230271E068444
chr61123051911230646E0681022
chr61123071411231707E0681217
chr61123173711234687E0682240
chr61123071411231707E0691217
chr61123173711234687E0692240
chr61122930911229791E0700
chr61122994111230271E070444
chr61123051911230646E0701022
chr61123071411231707E0701217
chr61123173711234687E0702240
chr61122930911229791E0710
chr61122994111230271E071444
chr61123051911230646E0711022
chr61123071411231707E0711217
chr61123173711234687E0712240
chr61122930911229791E0720
chr61122994111230271E072444
chr61123051911230646E0721022
chr61123071411231707E0721217
chr61123173711234687E0722240
chr61122930911229791E0730
chr61122994111230271E073444
chr61123051911230646E0731022
chr61123071411231707E0731217
chr61123173711234687E0732240
chr61122930911229791E0740
chr61122994111230271E074444
chr61123071411231707E0741217
chr61123173711234687E0742240
chr61122930911229791E0810
chr61122994111230271E081444
chr61123051911230646E0811022
chr61123071411231707E0811217
chr61123173711234687E0812240
chr61122738711227458E082-2039
chr61122776611227833E082-1664
chr61122814811228269E082-1228
chr61122930911229791E0820
chr61122994111230271E082444
chr61123051911230646E0821022
chr61123071411231707E0821217
chr61123173711234687E0822240