rs9372096

Homo sapiens
C>T
LOC105377922 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0398 (11911/29904,GnomAD)
T=0411 (11967/29118,TOPMED)
T=0476 (2386/5008,1000G)
T=0337 (1297/3854,ALSPAC)
T=0335 (1241/3708,TWINSUK)
chr6:105617855 (GRCh38.p7) (6q21)
AD
GWASdb2
1   publication(s)
See rs on genome
14 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.105617855C>T
GRCh37.p13 chr 6NC_000006.11:g.106065730C>T

Gene: LOC105377922, uncharacterized LOC105377922(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC105377922 transcriptXR_942833.2:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.507T=0.493
1000GenomesAmericanSub694C=0.380T=0.620
1000GenomesEast AsianSub1008C=0.486T=0.514
1000GenomesEuropeSub1006C=0.686T=0.314
1000GenomesGlobalStudy-wide5008C=0.524T=0.476
1000GenomesSouth AsianSub978C=0.520T=0.480
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.663T=0.337
The Genome Aggregation DatabaseAfricanSub8684C=0.548T=0.452
The Genome Aggregation DatabaseAmericanSub836C=0.400T=0.600
The Genome Aggregation DatabaseEast AsianSub1608C=0.434T=0.566
The Genome Aggregation DatabaseEuropeSub18474C=0.648T=0.351
The Genome Aggregation DatabaseGlobalStudy-wide29904C=0.601T=0.398
The Genome Aggregation DatabaseOtherSub302C=0.730T=0.270
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.589T=0.411
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.665T=0.335
PMID Title Author Journal
23953852Genome-wide association studies of maximum number of drinks.Pan YJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs93720962.19E-05alcohol consumption23953852

eQTL of rs9372096 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9372096 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr6106041484106042065E068-23665
chr6106042279106042425E068-23305
chr6106049169106049874E069-15856
chr6106051792106052471E069-13259
chr6106041484106042065E071-23665
chr6106042279106042425E071-23305
chr6106042579106042649E071-23081
chr6106051792106052471E071-13259
chr6106052479106052663E071-13067
chr6106049169106049874E081-15856
chr6106049962106050120E081-15610
chr6106051792106052471E081-13259
chr6106052479106052663E081-13067
chr6106051792106052471E082-13259