rs9374164

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0234 (7030/29932,GnomAD)
C=0234 (6837/29118,TOPMED)
C=0267 (1335/5008,1000G)
C=0221 (851/3854,ALSPAC)
C=0228 (844/3708,TWINSUK)
chr6:96866469 (GRCh38.p7) (6q16.1)
AD
GWASdb2
1   publication(s)
See rs on genome
60 Enhancers around
60 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.96866469T>C
GRCh37.p13 chr 6NC_000006.11:g.97314345T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.768C=0.232
1000GenomesAmericanSub694T=0.660C=0.340
1000GenomesEast AsianSub1008T=0.641C=0.359
1000GenomesEuropeSub1006T=0.781C=0.219
1000GenomesGlobalStudy-wide5008T=0.733C=0.267
1000GenomesSouth AsianSub978T=0.780C=0.220
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.779C=0.221
The Genome Aggregation DatabaseAfricanSub8720T=0.781C=0.219
The Genome Aggregation DatabaseAmericanSub836T=0.650C=0.350
The Genome Aggregation DatabaseEast AsianSub1610T=0.649C=0.351
The Genome Aggregation DatabaseEuropeSub18464T=0.771C=0.228
The Genome Aggregation DatabaseGlobalStudy-wide29932T=0.765C=0.234
The Genome Aggregation DatabaseOtherSub302T=0.860C=0.140
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.765C=0.234
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.772C=0.228
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs93741640.000238alcohol dependence21314694

eQTL of rs9374164 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9374164 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr69734697497347270E06732629
chr69734746097347582E06733115
chr69734863297348717E06734287
chr69735287197352953E06738526
chr69734697497347270E06832629
chr69734746097347582E06833115
chr69734863297348717E06834287
chr69734878897349177E06834443
chr69735754697357651E06843201
chr69734697497347270E06932629
chr69734746097347582E06933115
chr69734863297348717E06934287
chr69734878897349177E06934443
chr69735580597356149E06941460
chr69735619897356288E06941853
chr69735754697357651E06943201
chr69735774797357950E06943402
chr69726445297264703E070-49642
chr69726474097264823E070-49522
chr69731220397312344E070-2001
chr69731256197312844E070-1501
chr69731288297312932E070-1413
chr69732092597321232E0706580
chr69734697497347270E07132629
chr69734746097347582E07133115
chr69734863297348717E07134287
chr69734878897349177E07134443
chr69735287197352953E07138526
chr69735543197355738E07141086
chr69735580597356149E07141460
chr69735619897356288E07141853
chr69726445297264703E072-49642
chr69734697497347270E07232629
chr69734746097347582E07233115
chr69734863297348717E07234287
chr69734878897349177E07234443
chr69735543197355738E07241086
chr69735580597356149E07241460
chr69735619897356288E07241853
chr69735754697357651E07243201
chr69736011797360192E07245772
chr69726445297264703E074-49642
chr69734697497347270E07432629
chr69734746097347582E07433115
chr69734863297348717E07434287
chr69734878897349177E07434443
chr69735287197352953E07438526
chr69735543197355738E07441086
chr69735580597356149E07441460
chr69735619897356288E07441853
chr69735774797357950E07443402
chr69731220397312344E081-2001
chr69731256197312844E081-1501
chr69731288297312932E081-1413
chr69732001897320132E0815673
chr69732092597321232E0816580
chr69732436597324415E08110020
chr69732442397325376E08110078
chr69732563897325698E08111293
chr69732442397325376E08210078









Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr69728391697284068E067-30277
chr69728416597284314E067-30031
chr69728435697284444E067-29901
chr69728452497286152E067-28193
chr69728617997286240E067-28105
chr69734488597344969E06730540
chr69734508197346823E06730736
chr69728391697284068E068-30277
chr69728416597284314E068-30031
chr69728435697284444E068-29901
chr69728452497286152E068-28193
chr69728617997286240E068-28105
chr69734488597344969E06830540
chr69734508197346823E06830736
chr69728391697284068E069-30277
chr69728416597284314E069-30031
chr69728435697284444E069-29901
chr69728452497286152E069-28193
chr69734488597344969E06930540
chr69734508197346823E06930736
chr69728391697284068E070-30277
chr69728416597284314E070-30031
chr69728435697284444E070-29901
chr69728452497286152E070-28193
chr69728617997286240E070-28105
chr69734488597344969E07030540
chr69734508197346823E07030736
chr69728416597284314E071-30031
chr69728435697284444E071-29901
chr69728452497286152E071-28193
chr69734488597344969E07130540
chr69734508197346823E07130736
chr69728391697284068E072-30277
chr69728416597284314E072-30031
chr69728435697284444E072-29901
chr69728452497286152E072-28193
chr69728617997286240E072-28105
chr69734488597344969E07230540
chr69734508197346823E07230736
chr69728391697284068E073-30277
chr69728416597284314E073-30031
chr69728435697284444E073-29901
chr69728452497286152E073-28193
chr69734488597344969E07330540
chr69734508197346823E07330736
chr69728452497286152E074-28193
chr69734488597344969E07430540
chr69734508197346823E07430736
chr69728391697284068E081-30277
chr69728416597284314E081-30031
chr69728435697284444E081-29901
chr69728452497286152E081-28193
chr69734508197346823E08130736
chr69728391697284068E082-30277
chr69728416597284314E082-30031
chr69728435697284444E082-29901
chr69728452497286152E082-28193
chr69728617997286240E082-28105
chr69734488597344969E08230540
chr69734508197346823E08230736